Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq414 113 7e-21
seq511 109 9e-20
>seq414
Length=3833
Score = 113 bits (124), Expect = 7e-21
Identities = 86/99 (87%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||||||| ||| |||||| || ||||||||||| ||||| ||||| |||||
Sbjct 3221 GCTAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCTAT 3163
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 3162 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 3124
>seq511
Length=24383
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 16534 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 16592
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 16593 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 16631
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 16745 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 16804
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 16805 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 16864
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 16865 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 16907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79070821383777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |