Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4565 269 3e-67 seq1268 98.7 1e-15 >seq4565 Length=7484 Score = 269 bits (298), Expect = 3e-67 Identities = 1144/1780 (64%), Gaps = 43/1780 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6615 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 6614 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6555 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 6554 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6495 Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || ||||| || |||||||| || || || | ||||| || | || | Sbjct 6494 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6435 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 6434 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6375 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 6374 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6315 Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 6314 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6256 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529 || | | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 6255 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6197 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589 ||| || || || | | || ||| | || || || || | Sbjct 6196 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6137 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 6136 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6079 Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62705 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 6078 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6022 Query 62706 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 6021 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5963 Query 62765 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 |||| | | ||||| | || || || || || || || || || || | ||||||| Sbjct 5962 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5903 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62879 ||| |||| || || | || || | ||||| | || | ||| || | || Sbjct 5902 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5843 Query 62880 AACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 | ||||| || |||| || |||| ||||| || || |||| | | | | Sbjct 5842 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5783 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 ||| | || || ||||| | ||| | || || || | || | ||| || | Sbjct 5782 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5723 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 |||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| | Sbjct 5722 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5663 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCT 63113 | | ||| | | ||| | | | || || || | || | || || | |||| Sbjct 5662 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCT 5603 Query 63114 CTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | | || |||| | | | ||| |||||||| || | |||| |||| ||| Sbjct 5602 CATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCA 5550 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 |||||||||| || ||||| | | ||| || ||| | | || || ||||| ||| Sbjct 5549 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 5490 Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 ||||| |||||||| | || ||| || ||||| | || | ||| || || || Sbjct 5489 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 5431 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 5430 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 5371 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | ||||| || |||||||| || || || | ||||||||| |||||||| |||| Sbjct 5370 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAAC 5311 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 || | ||| || | || ||||| || |||| |||||||||| ||| || ||| | Sbjct 5310 TCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 5251 Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 |||||| || | ||| ||||| || || || || |||||||||| | || || Sbjct 5250 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 5191 Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 | || | || ||||| ||||| || || ||||| || |||| | || || || || Sbjct 5190 TGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCA 5131 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 || | || | || || || || | ||||| || ||||| || || Sbjct 5130 TGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 5071 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63708 |||| | || | || ||||| |||||||| || || ||||| || | |||| Sbjct 5070 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 5012 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | || || || |||||||| | ||| ||||| || | ||| Sbjct 5011 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972 >seq1268 Length=12646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 570/919 (62%), Gaps = 65/919 (7%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || || ||||| ||||| || | || ||||| || || || || || Sbjct 7453 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 7394 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 | | | || || || |||||||| || || || |||| | || || | || | Sbjct 7393 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 7335 Query 33117 TCCCAATTCAGAAATCAAT-CTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33174 | |||| || || | ||| || ||||| || || ||| ||||||| ||| Sbjct 7334 TACCAAGAGCGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCG 7275 Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234 | ||||| || | |||| | ||||||||| | || | ||||||||||| || Sbjct 7274 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 7216 Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 33294 || || ||||| || | | | || | | | || || | ||| || || Sbjct 7215 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 7156 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || | | || ||||| ||| || ||||| || || | || || || ||||| Sbjct 7155 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 7096 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| || | ||| | ||||||||| || ||||| || || ||||||||||||||| Sbjct 7095 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 7036 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473 |||||||| || || || |||||||| |||| || | || || | | | | Sbjct 7035 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 6976 Query 33474 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA-------- 33523 ||| || ||||| | |||||| ||||| ||||| || | ||||| | Sbjct 6975 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAG 6916 Query 33524 -------------------------------------------TCGTTTCTATGGCATTA 33540 | || || || ||||| Sbjct 6915 ATAGTTAGGAAATGTATTGTTTAGACCAATGAATGTGACTCACTTGTCTCAATTGCATTG 6856 Query 33541 AAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| ||| || | | || |||| || |||||||| | ||| || | Sbjct 6855 AAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGATGAGGAGAGAGTATGT 6797 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || || ||||| || || || || || |||||||| || | |||||||| || Sbjct 6796 TTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGAT 6737 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| || || || || | | || || || ||||||||||| ||||| Sbjct 6736 TTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGC 6677 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TGGTGTTAGTTTATTCC 33775 || || || | || || || ||||| || || | | ||| ||| ||||| Sbjct 6676 GAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATTGAGTTTGTT-ATTCC 6618 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 |||| | | || || || | || | ||||| ||||||| || |||||||| |||| Sbjct 6617 AATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCT 6558 Query 33836 TTTTATACATGTTCCAGAT 33854 |||| ||||| | |||||| Sbjct 6557 TTTTGTACATTTGCCAGAT 6539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909908823240