Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq576 96.9 3e-15 seq1268 95.1 1e-14 >seq576 Length=13942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| || || || ||||| ||||| Sbjct 11388 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCA 11329 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | || | || || |||||||||||||||| | | | | | |||||||| || Sbjct 11328 ACAACGTTTGATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAA 11269 Query 26948 CATTCAAAAAGAATCTAC 26965 ||| ||||||||||| || Sbjct 11268 CATCCAAAAAGAATCCAC 11251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 |||||| |||| | || || | ||| |||||||| | || || |||||| || Sbjct 11691 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 11632 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || || || ||||| | | || | || ||||||||||| |||||| Sbjct 11631 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 11572 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | | |||||||| ||||||||||| || |||||| ||||||| ||||| Sbjct 11571 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 11516 >seq1268 Length=12646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384 |||||| | ||| ||| || || |||||| || ||||| || ||||| ||||| Sbjct 6716 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 6657 Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444 | ||| | || || | ||| || ||||| || |||||||||| || |||||| |||| Sbjct 6656 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 6597 Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501 |||||||||||| || ||||| | | | | || || |||||| |||||||| Sbjct 6596 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 6540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633746072080