Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq576 93.3 4e-14 >seq576 Length=13942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || |||||| | |||||||||||| | ||||| Sbjct 11423 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 11364 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || ||||| |||||||| | |||| | || || || Sbjct 11363 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 11304 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| | | | | ||||| || ||||| ||||||||||| || |||| Sbjct 11303 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 11244 Query 24195 TTAGTG 24200 || ||| Sbjct 11243 TTGGTG 11238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||| |||||||| | || || |||||| || Sbjct 11691 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 11632 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || || |||||| | |||| | || ||||| ||||| |||||| Sbjct 11631 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 11572 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||||| || ||||||||||| || ||||| Sbjct 11571 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 11531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429910906382295