Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq576 114 1e-20 seq257 102 8e-17 >seq576 Length=13942 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||||||||||||||| |||||| Sbjct 11501 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 11560 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || ||||||||| |||| || ||||| |||||||| || Sbjct 11561 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 11620 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || || || ||| | | || | |||||| ||||||||| Sbjct 11621 ATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACC 11680 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 11681 TCGAGGGTGATGGTCTTGCCGGT 11703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | || |||||| |||||||||||||| Sbjct 10765 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 10824 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | ||||| | |||||| || || |||| || ||||| |||||||| || Sbjct 10825 AGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGG 10883 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| | | || ||||| | || | ||||| | || || | Sbjct 10884 GATACCCTCCTTGTC-TTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCA 10942 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || | ||| || ||||| |||||||| Sbjct 10943 CTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 10991 >seq257 Length=33499 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||||||||||||||| || | ||| || |||||| || ||||| || ||| ||| Sbjct 15647 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 15588 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | ||||| || |||||||| || ||||| || ||||| ||| || ||||| | | Sbjct 15587 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15528 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | |||||| | |||||||| || | ||| | ||| || || || || || || |||| Sbjct 15527 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 15468 Query 131225 A 131225 | Sbjct 15467 A 15467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471984544133760