Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq576 120 3e-22
>seq576
Length=13942
Score = 120 bits (132), Expect = 3e-22
Identities = 149/202 (74%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| |||||| | || || || ||||||| | || || |||||||| ||||| |||||
Sbjct 11435 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGA- 11377
Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
|| || ||| || ||| ||||| || || ||||| || || ||||| || | |
Sbjct 11376 -CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| || || || |||||| | ||||||| |||||| || |||| ||||| || |||||||
Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258
Query 25189 AATCCACGCTACATTTAGTGCT 25210
||||||| || || || |||||
Sbjct 11257 AATCCACCCTTCACTTGGTGCT 11236
Score = 100 bits (110), Expect = 2e-16
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || |||| ||| | |||||||| |||||
Sbjct 10991 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 10932
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||| |||| | ||| ||||| || || || ||||| |||
Sbjct 10931 GATACCATTGA--CAATGTCAAGTCAAAGATTCAA-GACAAGGAGGGTATCCCACCGGAC 10875
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || || || || || |||| | ||| | ||||||
Sbjct 10874 CAACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTAC 10815
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||| | || || |||||
Sbjct 10814 AACATTCAGAAGGAGAGCACTTTGCACTTGGTGCT 10780
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || ||||||| |||| || ||||| || || ||||| | |||
Sbjct 11703 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 11644
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| || || || || || ||||| || ||||||||||| | || || || ||||||
Sbjct 11643 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 11584
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| || || || |||| ||||| |||||||| || || || || |||
Sbjct 11583 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTCCAT 11524
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 11523 CTCGTCCT 11516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433302708405035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |