Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 147 2e-30
>seq1268
Length=12646
Score = 147 bits (162), Expect = 2e-30
Identities = 205/287 (71%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||||||||| | ||||| || |||| || |||| |||||||| |||||||
Sbjct 6825 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 6766
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | ||| || ||||| | || | ||| || ||
Sbjct 6765 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 6706
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || |||||||| || ||||||||||| || || || | | || || ||||
Sbjct 6705 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 6646
Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||| || || |||| ||||||| || || ||||| | |||| |||
Sbjct 6645 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 6586
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| | ||||| || ||||| || || ||||||||||| | ||| ||
Sbjct 6585 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6539
Score = 105 bits (116), Expect = 7e-18
Identities = 167/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
|||||| ||||||||||| | |||||| || || || || | ||||||| ||| || |
Sbjct 7147 GCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAG 7088
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || || ||||||||||| || || ||||| || ||| || ||
Sbjct 7087 ACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAA 7028
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|| || || || || ||||| || || | ||| | ||||| | | | || | |
Sbjct 7027 GATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAG-AGTTTTTGTCTT 6969
Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| |||||| | | |||||| |||||||| |||||||| ||||| | ||| |||||
Sbjct 6968 GAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAGATAG 6912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556827464920360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |