Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq576 123 2e-23 seq4565 114 1e-20 seq3874 100 2e-16 seq257 89.7 4e-13 >seq576 Length=13942 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || | || | ||||||||| | | Sbjct 10991 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 10932 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| ||| |||||||||||||||||||| ||||| || ||| Sbjct 10931 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 10872 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||||| |||||| | | || | || ||||||||| Sbjct 10871 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 10812 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 10811 ATTCAGAAGGA 10801 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||| | || || || || |||||||||| || || | |||| ||| | ||| Sbjct 11435 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 11376 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || |||| || || || ||||||||||||||||| || |||||||||||| | || Sbjct 11375 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 11316 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || || || ||||| | || ||| |||||| | ||| |||||||| ||||||||| Sbjct 11315 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAA 11256 Query 22411 TCCACCATACATTTAGT 22427 |||||| | || || || Sbjct 11255 TCCACCCTTCACTTGGT 11239 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | Sbjct 11219 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 11160 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| ||| || ||||| ||||||||||| ||||| || || Sbjct 11159 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 11100 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | |||||| |||||| | || || |||||| Sbjct 11099 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 11040 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || ||||| ||||| | ||||| || Sbjct 11039 ATCCAGAAAGAGTCCACACTGCATTTGGT 11011 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || ||| ||||||| | ||| | | || Sbjct 11703 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 11644 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| ||||| || || ||||| || | || || || |||||| Sbjct 11643 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 11584 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| ||| ||| | ||| |||||||||||||| || || || Sbjct 11583 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 11531 >seq4565 Length=7484 Score = 114 bits (126), Expect = 1e-20 Identities = 575/899 (64%), Gaps = 33/899 (4%) Strand=Plus/Minus Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570 ||||| | |||||||| ||| ||| |||| |||||||| |||| ||| ||| Sbjct 6011 TCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC 5952 Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630 | ||| |||||||||||||| || || ||||| || || |||| || | || Sbjct 5951 TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGA 5892 Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690 || || | | | | ||| |||| ||| || ||| ||||| |||||| | Sbjct 5891 GTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGG 5832 Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750 | | ||| || ||||| || ||| || ||| | | | || ||| ||||||||| Sbjct 5831 AGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATT 5772 Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTG 129810 || | ||||||||| | ||||||||| | | |||||| || || ||| ||||| Sbjct 5771 TCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTG 5712 Query 129811 CAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTC 129870 || ||||| ||||| | |||| | || | || || || ||| | |||| ||||| Sbjct 5711 CATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGG-- 5654 Query 129871 CTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGC 129926 | || ||| | | | || ||||| ||||| | | | | || ||||| || Sbjct 5653 -AGTACCAAAGCTTTTGGGCTTTGAT-GGTCTTGCGACCTCTACCTTCCTTCTCATAACT 5596 Query 129927 CACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACG 129983 | |||| || |||||| || ||| | ||| || |||| || ||||| Sbjct 5595 CTCATAGAGAGCTTCAAACTCGTCGCCATATAC---ATCAGCCAACCCAGGACATTCATT 5539 Query 129984 CGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042 || ||||| | |||| || | | | | ||| || || ||||| || | ||| || | Sbjct 5538 GGGGCACATTAGTGTCCA-ATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAA 5480 Query 130043 CCCACAGGGCGTACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098 ||||| ||| || || | ||| |||| |||| |||| | || || | | | Sbjct 5479 TCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT-TCCTTG----CCGTGGTTC-T 5426 Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156 ||| || || ||||| ||| ||| || |||||||| || |||| ||| | ||| | || Sbjct 5425 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 5366 Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213 | || || ||| || |||||||| |||| | | | || ||| | ||||| | Sbjct 5365 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 5306 Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273 ||| | | | ||||||| | ||||| || | | ||| | ||| || | Sbjct 5305 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 5246 Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCG 130332 | | | |||| | | ||||| || || || || ||| || |||| || || || Sbjct 5245 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 5186 Query 130333 CGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 | || || |||||||| ||| | ||||| || || || || | | |||||| || || Sbjct 5185 TG-AGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGA 5128 >seq3874 Length=1130 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||| || ||||| ||||| |||||||| || || |||||||| || Sbjct 2 ATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAACGTCTGATCTTCGCCGGCAAGCAA 61 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | || ||| |||||| | ||||| |||||||| ||||| |||||||| Sbjct 62 CTCGAAGATGGACGCACCCTTTCCGACTACAACATCCAAAAGGAATCCAC 111 >seq257 Length=33499 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | ||||| | ||| || |||| Sbjct 15482 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATTGACAATGTCAAGTCC 15541 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || ||||||||| | || || ||||| || Sbjct 15542 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 15601 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | ||||| || ||| | || || |||||||||||||| Sbjct 15602 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 15645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419703502181785