Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq523 87.8 4e-12
>seq523
Length=35305
Score = 87.8 bits (96), Expect = 4e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| |||| | || ||||||| |||||||| || ||
Sbjct 32662 GGTGAGGATCTTTGCAACTGTACTTTCAACTTGGCCTATGGTGCTAAGATTCTTCTCAAT 32721
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| | ||||||||| | || |||||||| ||| || || || |
Sbjct 32722 CAAACTCACCTCCGTCTGAAGCGTGGCCAACGATATGGTCTTTGCGGACCTAACGGTTCC 32781
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||| ||||| |||| || | ||||| || || ||
Sbjct 32782 GGAAAGTCCACTCTTATGCGTGCCATCAACAACGAACAAGTCGAAGGTTTCCCCAAGAAG 32841
Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|||||| | ||| |||| || |||||||| |||||||
Sbjct 32842 AGTGAGGTTAAGACTGTGTTCGTTGAGCACGATCTCGACTC 32882
Score = 87.8 bits (96), Expect = 4e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| ||||| | ||||| |||||||||| || ||||||||||| |
Sbjct 34034 CCAACTTTGGTTTGGACGCTGAGTTGGTTTCTCACTCTCGTATGTTGGGTCTTTCTGGTG 34093
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| |||| ||| || |||| |||||||| ||||| |||||||
Sbjct 34094 GACAGCGTGTCAAGGTTGTTCTCGCTGCTTGCTC-GTGGCAACGTCCTCATTTGATCGTC 34152
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||| ||||||||||| ||||||| ||
Sbjct 34153 CTTGACGAACCTACCAACTACTTGGACCGTGA 34184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027773732897549
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |