Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq576 132 4e-26
>seq576
Length=13942
Score = 132 bits (146), Expect = 4e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | || | ||| | ||||| || |||||||||||||| |||
Sbjct 11498 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCG 11557
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||| ||||||||||||||| || ||| |||| | ||||||||||||||
Sbjct 11558 CTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGG 11617
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || || || |||||| |||| | || | ||| ||| |||| |||
Sbjct 11618 GGAATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCG 11677
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | ||| | || ||||||||
Sbjct 11678 ACCTCGAGGGTGATGGTCTTGCCGGT 11703
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || ||||||||||| |||||||| |||
Sbjct 11218 ATACCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 11277
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| || ||| |||||| ||||||||||||||| |||| | ||| ||||| ||||||
Sbjct 11278 CTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGA 11337
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | || | |||||||| || |||
Sbjct 11338 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCG 11397
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | || | || ||||| || ||||| || ||
Sbjct 11398 ACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 11435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420109878461868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |