Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 176 9e-39
>seq1268
Length=12646
Score = 176 bits (194), Expect = 9e-39
Identities = 356/517 (69%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| ||||| |||||||| || |||||||| ||| ||||| | || | | | | ||
Sbjct 6926 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 6984
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | || | ||||| || ||| | || || ||||||||||||||| || | ||
Sbjct 6985 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 7044
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
||| || ||||||||||||||| || | | |||| | || ||||| ||||| || ||
Sbjct 7045 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 7104
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | | || || || || |||| ||||| || |||||||| ||||| |||
Sbjct 7105 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 7161
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | | |||| || ||| || |||| | ||||||| ||||| || |||||
Sbjct 7162 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 7221
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990
||| | || ||| | || || | || || ||| | || | ||||||||| ||
Sbjct 7222 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 7280
Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048
| ||| |||| |||||| ||| ||| ||||| | ||| || || | ||| ||
Sbjct 7281 TGATGAAGCAA-TACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAG 7339
Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108
| | ||||| | | ||| |||||||| |||||||||||||| | | |||||
Sbjct 7340 AAG-GTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 7398
Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||| ||||| ||||||||| | || | |||||||||
Sbjct 7399 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 7435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944282669494640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |