Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1268 132 1e-25 >seq1268 Length=12646 Score = 132 bits (146), Expect = 1e-25 Identities = 182/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||||||||| || ||||| | |||| | |||||| | ||| ||| |||| || | Sbjct 7200 TCATCACAGAGGCTGTTGAGATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 7259 Query 243563 TTATTGGCATGAACTCTGAAC-TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | |||| | ||| || |||||||| ||||| ||||| || || Sbjct 7260 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTTGCCGATCGTCTT 7318 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| |||||| | ||||| |||||||| || ||||| || | ||| |||||| Sbjct 7319 CTAGTCGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAG 7378 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| || || ||| || || ||||||||||| ||| | || |||| || || Sbjct 7379 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 7438 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 7439 GCTGGTGTTATG 7450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102812328317150