Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4565 152 6e-32 seq1268 100 3e-16 >seq4565 Length=7484 Score = 152 bits (168), Expect = 6e-32 Identities = 925/1466 (63%), Gaps = 47/1466 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 6733 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 6674 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||| | | |||||| || | | |||| | ||| || || |||| Sbjct 6673 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 6614 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | |||||| ||| || || || | ||| |||||||| || ||||| | || || Sbjct 6613 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 6555 Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 6554 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6496 Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 113862 | || ||||| || || ||||| | || || | | |||||| | | ||| Sbjct 6495 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6436 Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 113920 ||| | || || | ||||||| | || ||| | | ||||| || || Sbjct 6435 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 6378 Query 113921 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 113979 || || | | || | ||| ||||| || | |||||||| ||||||||||| ||| Sbjct 6377 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 6319 Query 113980 ACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 114039 ||| | ||||| | |||| |||||| ||||| || || | ||| | ||||| |||| Sbjct 6318 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 6259 Query 114040 ACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTC 114094 ||| | || | ||| || ||| | | |||||||| | || | || | | | Sbjct 6258 ACCGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC 6199 Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154 ||||| ||||||| | || || || | ||| | || || || || | ||| Sbjct 6198 TCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTC 6144 Query 114155 TCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATT 114214 || || | ||| ||| || | || | || | || ||||| || || Sbjct 6143 TCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATA 6084 Query 114215 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--GC 114272 || || || || || || | |||||| || || ||||| | | ||| | Sbjct 6083 GTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGA 6024 Query 114273 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 114332 | ||| || |||| || |||||||| ||||||| | || || ||||| | | || Sbjct 6023 GCCAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAAT 5966 Query 114333 TAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391 | ||||| || ||| ||||| || | || | || || | | | || | ||| Sbjct 5965 TGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTT 5907 Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTC 114450 || || || | || | || |||||||||| | |||| || | | ||| ||| Sbjct 5906 CTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTC 5850 Query 114451 ATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 || ||| | | || || || || || |||| ||||| || | ||||| Sbjct 5849 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 5790 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 ||| ||| || | |||||| || |||||||| || || ||||||||| | ||||||| Sbjct 5789 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 5730 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 114628 || || ||| |||| || |||||||||||||||||| |||| | || ||||| ||| Sbjct 5729 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTT 5670 Query 114629 TGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGC 114685 || | || |||||| | | ||| | | |||| | ||| ||| ||| Sbjct 5669 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTA 5613 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 || |||| ||| || | ||||| ||||||||||| || || | || | | | Sbjct 5612 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 5553 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || | || ||||| | || | ||| | | || ||||||||||||||| Sbjct 5552 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATG 5493 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||| || || ||||| | || |||| ||||| || ||| ||||||| | || Sbjct 5492 AAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCG 5433 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || || | |||| || || | | ||| |||||||| || || || || || Sbjct 5432 TGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 5373 Query 114926 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTA 114979 || | || || | |||| ||| | |||| || || || || ||| ||| Sbjct 5372 GCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTG 5316 Query 114980 AATACGCGAAGCATTGGAATGATACC 115005 || || || ||||| || | ||| || Sbjct 5315 AAAACTCGTAGCATCGGTACGATGCC 5290 >seq1268 Length=12646 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 |||||||| || |||||||||||||| ||||| ||||| || || | ||| | || Sbjct 7131 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 7072 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | |||||| || | | ||||| || ||||||||| ||||| ||| Sbjct 7071 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 7012 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || |||| ||||||| |||||||| Sbjct 7011 GCAAAAGCAACCAGACGCTGAGCAAAGG 6984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597317840920120