Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq576 107 2e-18
>seq576
Length=13942
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||||||||||| || || || |||||||||||||| |
Sbjct 11254 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 11313
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||| ||||| |||||||| ||||| || ||||| ||| || || | |
Sbjct 11314 AAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACA 11373
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||| ||||| | || | || || ||||| ||||| ||
Sbjct 11374 TTG-TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTT 11432
Query 138600 TAC 138602
||
Sbjct 11433 GAC 11435
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | |||||||||||||||||||||||||||
Sbjct 11501 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 11560
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||| | |||||||||||||| ||
Sbjct 11561 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 11620
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | ||| ||| | ||||| ||
Sbjct 11621 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGAC 11679
Query 138567 CTCGA 138571
|||||
Sbjct 11680 CTCGA 11684
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 10993 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 11052
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| ||||| | | |||| ||||| || |||||||| ||
Sbjct 11053 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 11112
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| ||| ||| | | || | ||| || | |||||| |||
Sbjct 11113 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 11172
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || || || || || || || |||||
Sbjct 11173 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481
|||||| ||||||||||| || | ||| | || | ||||| | || || || | |
Sbjct 10800 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAA 10858
Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAA 138539
|||| | |||||||||||||| || ||||| || ||||| ||| | |||| || |
Sbjct 10859 AGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTGACA 10917
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | ||| ||||| || | || | || || ||||||| ||| ||
Sbjct 10918 TTG-TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTT 10976
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 10977 GACGAAGATCTGCAT 10991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496232692492080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |