Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq576 116 9e-21
seq3874 93.3 1e-13
seq4565 84.2 5e-11
>seq576
Length=13942
Score = 116 bits (128), Expect = 9e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || |||||||| ||||||||||| | ||||||||| ||| ||
Sbjct 11507 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTA 11566
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || || || || |||||||| | ||||| |||||||| ||||||
Sbjct 11567 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 11626
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| ||| || | | || || || |
Sbjct 11627 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGG 11686
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 11687 GTGATGGTCTTGCCGGTGA 11705
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || || || ||||| || |||| ||||||||| | | ||| | |||||
Sbjct 11008 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 11067
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| || || ||||| ||||| ||||||||||| || || || ||
Sbjct 11068 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 11127
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| |||||| |||| ||| |||| | || || ||||| ||||| |||
Sbjct 11128 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 11187
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || |||||
Sbjct 11188 TTTCCGGTAAGTGTCTTGACGAAGATTTG 11216
>seq3874
Length=1130
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| || |||||||||| ||||||||| | | || | |||||||
Sbjct 126 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 67
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| || ||||| ||||||||||| ||||| ||||| || ||
Sbjct 66 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGG 26
>seq4565
Length=7484
Score = 84.2 bits (92), Expect = 5e-11
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796
|| ||||||||| || ||| |||| || |||||||| | ||||| || | ||
Sbjct 5736 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 5680
Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856
||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | |
Sbjct 5679 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 5620
Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916
|||| ||||| || || || ||||||||||| |||| || || | || || | ||
Sbjct 5619 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 5560
Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976
| | || ||| ||| || || || | || |||||| | | | || || |
Sbjct 5559 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 5500
Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012
|||||||||||| || | | |||| | || |||||
Sbjct 5499 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 5464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178849262475863
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |