Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 140 3e-28
seq576 120 3e-22
seq3874 89.7 5e-13
seq257 89.7 5e-13
>seq1268
Length=12646
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || ||||||||| || || |||| ||||| | ||||||||| ||||| ||
Sbjct 6823 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 6764
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | ||| |||||||| || ||
Sbjct 6763 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 6704
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || |||||| || ||||| || || || ||||| |||||||| |||
Sbjct 6703 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 6644
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || || | | | ||| ||| | |||||| |||| ||| | ||| ||
Sbjct 6643 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 6584
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| |||||||||||
Sbjct 6583 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 6548
Score = 93.3 bits (102), Expect = 4e-14
Identities = 340/521 (65%), Gaps = 11/521 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || || || || | ||||| || || || || || || |
Sbjct 7450 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7391
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708
| ||| ||| | ||| || || || |||||||| | ||||| ||| || |
Sbjct 7390 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 7331
Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767
| || |||| || || | ||||| |||||||||||||||||| ||| |||||
Sbjct 7330 AAGAG--CGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC- 7274
Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || || |||| || || || ||||| | || ||| ||||| | |
Sbjct 7273 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 7215
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || || |||| || || || | | ||| || || ||| ||| || ||
Sbjct 7214 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 7155
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||| || |||||| ||| | || || || | ||| ||||| || ||| ||
Sbjct 7154 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 7095
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
|||| | || | ||| | ||| || || |||||||| || || | ||||| ||
Sbjct 7094 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 7035
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
||||||| |||||| || || || ||||| ||||| |||| | || || | | ||
Sbjct 7034 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 6975
Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105
|| || | ||||| | | ||||| ||||| || |||||
Sbjct 6974 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 6935
>seq576
Length=13942
Score = 120 bits (132), Expect = 3e-22
Identities = 153/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| ||| ||| | | | | |||| ||||
Sbjct 11705 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG--TAAA 11648
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || || | || || |||||||||||| | ||||||||||| | || | ||| ||
Sbjct 11647 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 11588
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|||||| || || || | || ||| | | |||||||||||| |||||||| | || ||
Sbjct 11587 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 11528
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| | | |||||
Sbjct 11527 CCATCTCGTCCTCCGTCTTCGTGGCGG 11501
Score = 113 bits (124), Expect = 5e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| | || |||||| | |||||| | |
Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| ||||| | || ||||| || | |
Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | ||| || ||||| || || || | |||||||| | |||||||||||||||||| |
Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258
Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458
|| | || || || |||||||| ||
Sbjct 11257 AATCCACCCTTCACTTGGTGCTCCG 11233
Score = 82.4 bits (90), Expect = 8e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || || ||||| | || || ||| | |
Sbjct 11219 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 11160
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | ||| ||| |||| || || ||||| || || | |||||
Sbjct 11159 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 11101
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || || || | || || || || || || || | ||||| || ||||||||
Sbjct 11100 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 11041
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| || || | || ||||||||||| || |||
Sbjct 11040 CATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGT 11004
>seq3874
Length=1130
Score = 89.7 bits (98), Expect = 5e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390
|||| ||||| |||||||| || | || || || || || || | ||| ||||| ||
Sbjct 2 ATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAACGTCTGATCTTCGCCGGCAAGCAA 61
Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450
|| || || | |||||||| |||||||||||||||||||||| | || || || |||
Sbjct 62 CTCGAAGATGGACGCACCCTTTCCGACTACAACATCCAAAAGGAATCCACTCTTCACTTG 121
Query 38451 GTGCTGCGT 38459
|| || |||
Sbjct 122 GTCCTTCGT 130
>seq257
Length=33499
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||||| ||||| || || || ||||| || ||||||||| | || |||||| || | ||
Sbjct 15460 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 15519
Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | | || || |||| ||||| |||||||||||| | ||||||||
Sbjct 15520 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 15579
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
|| | || | ||| || || || || || |||| || ||||| |||||||||||
Sbjct 15580 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 15639
Query 38426 CCAAAAGG 38433
|||||||
Sbjct 15640 TCAAAAGG 15647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500142858405760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |