Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1268 140 3e-28 seq576 120 3e-22 seq3874 89.7 5e-13 seq257 89.7 5e-13 >seq1268 Length=12646 Score = 140 bits (154), Expect = 3e-28 Identities = 197/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||||||| || || |||| ||||| | ||||||||| ||||| || Sbjct 6823 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 6764 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | ||| |||||||| || || Sbjct 6763 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 6704 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || |||||| || ||||| || || || ||||| |||||||| ||| Sbjct 6703 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 6644 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | | | ||| ||| | |||||| |||| ||| | ||| || Sbjct 6643 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 6584 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| ||||||||||| Sbjct 6583 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 6548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 340/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || || | ||||| || || || || || || | Sbjct 7450 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7391 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 | ||| ||| | ||| || || || |||||||| | ||||| ||| || | Sbjct 7390 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 7331 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767 | || |||| || || | ||||| |||||||||||||||||| ||| ||||| Sbjct 7330 AAGAG--CGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC- 7274 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || || |||| || || || ||||| | || ||| ||||| | | Sbjct 7273 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 7215 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || |||| || || || | | ||| || || ||| ||| || || Sbjct 7214 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 7155 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || |||||| ||| | || || || | ||| ||||| || ||| || Sbjct 7154 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 7095 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 |||| | || | ||| | ||| || || |||||||| || || | ||||| || Sbjct 7094 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 7035 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| || || || ||||| ||||| |||| | || || | | || Sbjct 7034 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 6975 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 || || | ||||| | | ||||| ||||| || ||||| Sbjct 6974 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 6935 >seq576 Length=13942 Score = 120 bits (132), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| ||| ||| | | | | |||| |||| Sbjct 11705 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG--TAAA 11648 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || |||||||||||| | ||||||||||| | || | ||| || Sbjct 11647 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 11588 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || || | || ||| | | |||||||||||| |||||||| | || || Sbjct 11587 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 11528 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | | ||||| Sbjct 11527 CCATCTCGTCCTCCGTCTTCGTGGCGG 11501 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || |||||| | |||||| | | Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || ||||| || || || | |||||||| | |||||||||||||||||| | Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258 Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || || |||||||| || Sbjct 11257 AATCCACCCTTCACTTGGTGCTCCG 11233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || ||||| | || || ||| | | Sbjct 11219 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 11160 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | ||| ||| |||| || || ||||| || || | ||||| Sbjct 11159 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 11101 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || || || || || | ||||| || |||||||| Sbjct 11100 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 11041 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || ||||||||||| || ||| Sbjct 11040 CATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGT 11004 >seq3874 Length=1130 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| |||||||| || | || || || || || || | ||| ||||| || Sbjct 2 ATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAACGTCTGATCTTCGCCGGCAAGCAA 61 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | |||||||| |||||||||||||||||||||| | || || || ||| Sbjct 62 CTCGAAGATGGACGCACCCTTTCCGACTACAACATCCAAAAGGAATCCACTCTTCACTTG 121 Query 38451 GTGCTGCGT 38459 || || ||| Sbjct 122 GTCCTTCGT 130 >seq257 Length=33499 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||||| ||||| || || || ||||| || ||||||||| | || |||||| || | || Sbjct 15460 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 15519 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | | || || |||| ||||| |||||||||||| | |||||||| Sbjct 15520 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 15579 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || | || | ||| || || || || || |||| || ||||| ||||||||||| Sbjct 15580 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 15639 Query 38426 CCAAAAGG 38433 ||||||| Sbjct 15640 TCAAAAGG 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500142858405760