Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1533 134 5e-26 seq576 98.7 4e-15 seq257 89.7 2e-12 >seq1533 Length=14740 Score = 134 bits (148), Expect = 5e-26 Identities = 201/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || ||||||||||||| || ||||| || ||||||| || ||||| ||||| | Sbjct 7292 ATGCTGTTGTTACTGTTCCCGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 7233 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 7232 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 7173 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 7172 TTGCCTACGGTCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 7123 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 7122 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 7063 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| ||||| | || |||||||| | |||| Sbjct 7062 AAGTCTACAAATGGTGACACTCACTTGGGTGGTGAAGACTTCGATA 7017 >seq576 Length=13942 Score = 98.7 bits (108), Expect = 4e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || |||||||| || || || || || | ||| | Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || |||||||| |||||||| | || || || || || || | || | Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 11257 AATCCACCCTTCACTTGGT 11239 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || ||||| |||||||| |||||||| || || ||||| || || || ||| |||| ||| Sbjct 11643 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 11584 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 |||||||||||||| | || ||| || || || ||| | ||||| Sbjct 11583 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGA 11537 >seq257 Length=33499 Score = 89.7 bits (98), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || |||||| Sbjct 15461 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 15520 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || || || || || ||||| |||||||| || || |||||| Sbjct 15521 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 15580 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || ||||| || || ||| |||| | | || || || ||| Sbjct 15581 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATT 15640 Query 391233 GATAAGG 391239 | |||| Sbjct 15641 CAAAAGG 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975597171771212