Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq358 206 2e-47 seq3796 86.0 5e-11 >seq358 Length=3727 Score = 206 bits (228), Expect = 2e-47 Identities = 896/1401 (64%), Gaps = 17/1401 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || || Sbjct 2757 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 2698 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 2697 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 2638 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| ||| ||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 2637 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 2578 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 2577 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 2518 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || ||||| || || || | ||||||||| | || | |||||| | || | || Sbjct 2517 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 2458 Query 517559 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | || || || | || | |||| || ||||| || || | ||||| || Sbjct 2457 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 2398 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 2397 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 2338 Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 2337 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 2281 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 2280 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 2222 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | |||| |||||||| ||||| ||| | ||| | || | | Sbjct 2221 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 2163 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || || || ||||| | ||| || | ||| || | || || | || || || || | Sbjct 2162 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 2103 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 2102 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 2044 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 2043 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1984 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || ||||| ||||| | ||| | || | || | | |||| || | || || Sbjct 1983 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 1924 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 |||| | ||| |||| ||||| |||||| ||||| | ||| || || || || || Sbjct 1923 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 1864 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || || || || || | ||| || |||| ||||| ||||| || || || Sbjct 1863 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 1804 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || | | |||||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 1803 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 1744 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 || ||| | || ||||| |||||||| | || || | | || | ||| | || Sbjct 1743 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACGGTTCCACCGAGGTAG 1684 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || || | |||| || || | ||| || || |||| ||| || | || Sbjct 1683 GCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAAT 1624 Query 518390 TGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 ||||| | || |||| | ||||||| ||| || ||| | || || Sbjct 1623 TGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGAC 1565 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || ||||| ||| |||||||| | ||| || | |||| || | | ||| || Sbjct 1564 CTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGAT 1505 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | || || ||||| || | || || || || || || || |||| | || || || Sbjct 1504 CAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGGC 1445 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||| |||||| |||| || ||||| || | ||| | || |||||||| || || || Sbjct 1444 ATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCC 1385 Query 518629 TTGATCATTCGCAATAATTTC 518649 ||| || || || |||||||| Sbjct 1384 TTGGTCGTTGGCGATAATTTC 1364 >seq3796 Length=28140 Score = 86.0 bits (94), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 671612 TCCAGAGGTTTTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTT 671670 || |||||||| || || ||||| | | || |||||| || |||||| ||||| Sbjct 11191 TCGAGAGGTTTC-GTTGAGAATTCATATCTTAGAGGTCTTACCCCCACTGAATTCTTCTT 11249 Query 671671 CCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGG 671730 ||| | ||||| |||||||||||| | || |||| || | || || || || ||||| Sbjct 11250 CCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGACCGCAGAAACTGG 11309 Query 671731 TTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAATATGATGGTAC 671790 ||| |||||| | ||||| ||| || |||||| ||| ||||||| ||||| Sbjct 11310 TTACATTCAACGTCGTCTTGTCAAAGCTCTTGAAGATGTCATGGCGAAATATGACGGTAC 11369 Query 671791 AGTAAGAAA 671799 ||| |||| Sbjct 11370 AGTCCGAAA 11378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780584754045034