Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 190 3e-43
seq1268 129 7e-25
>seq4565
Length=7484
Score = 190 bits (210), Expect = 3e-43
Identities = 1148/1808 (63%), Gaps = 59/1808 (3%)
Strand=Plus/Plus
Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615
|||||||||||||| | ||||| | |||| ||||| | ||| ||||
Sbjct 4922 TCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAACGTCCAC 4981
Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675
|| | ||| ||||||| || || | ||||| || || || ||||| || | | |
Sbjct 4982 AGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTG 5041
Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735
|||| ||| || |||||| |||| ||||| | || || || ||| ||
Sbjct 5042 AGACCTACAACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCG 5101
Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795
||||||||||| | | || | || || ||||| |||| | ||||||||| |
Sbjct 5102 CTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTA 5161
Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855
| |||| ||||| | || |||| |||||| ||||| || ||||| ||||
Sbjct 5162 TTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTA 5221
Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGT 111914
| || | |||| || || | |||| | || | || ||||| || |||
Sbjct 5222 TTGGTCTCAACATTCACAGAATCCGTGCCA-CTGGTGCATACATCGCCGGTACCAACGGT 5280
Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974
| || | || || | || ||||| || || || || ||| || | || || ||
Sbjct 5281 AACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGAC 5340
Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028
|||| ||| ||||| | || | ||||||||||||||||| ||||||||
Sbjct 5341 CAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCACGCA 5397
Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088
||| | | |||||||| || | || ||||| || | || || | || |||
Sbjct 5398 GATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGT 5457
Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148
||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| |
Sbjct 5458 GATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCG 5517
Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCCGGTCTCTCCGATGCCGTGGGTGAG 112205
||||| | || | || || ||| | | || || | | |||| || ||
Sbjct 5518 GATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGGCGAC 5574
Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263
||||||||||| ||||| | || ||| | ||| || | | | | || ||| |
Sbjct 5575 GAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACCATCA 5632
Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323
||| | | ||| | | |||||| || ||||||| ||||| || | |||| |
Sbjct 5633 AAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCA 5692
Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383
|||||||||| || || || ||| | ||||| || |||||||| | || || |
Sbjct 5693 TGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCGCA 5752
Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443
| ||||| | || |||||||| | |||| | | | |||||| ||| ||||
Sbjct 5753 GCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGCTGTA 5812
Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGATTAT 112502
|| | || || || |||||||| | | |||||| | || | | || | ||||
Sbjct 5813 ACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGATTTC 5871
Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562
|||| || ||||| ||||| || || | |||| | |||| | ||||| |
Sbjct 5872 CAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGACATC 5931
Query 112563 AATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621
|| | |||||||| ||| || | || ||| | | || || || || | | |
Sbjct 5932 AACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCGCTGT 5990
Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 112681
|||||| |||||||| || |||| || | | ||| ||||||| || ||
Sbjct 5991 CGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCACCTGA 6050
Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741
||| ||| | |||| | || || || || || || ||||| ||| |||| |
Sbjct 6051 AGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGA-CATCG 6108
Query 112742 TTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797
| || ||| | || || |||| ||| | ||||| |||| || || || || | |
Sbjct 6109 TCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTGTCT 6166
Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 112856
| | || | ||||||| |||||||||| | || | ||| | | | | ||||||
Sbjct 6167 CGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGACTGG 6225
Query 112857 GA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915
|| ||| | ||| || |||||| | | ||| | || |||||| | | | || ||
Sbjct 6226 GATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGCTCC 6284
Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975
|||||||||||| |||| | ||||| | ||| || || ||||||||||| |||||
Sbjct 6285 TATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATACAC 6344
Query 112976 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033
| |||||||| ||| | | | | || ||||| || |||| ||| |||
Sbjct 6345 TTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CCATG 6401
Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT 113089
|| | | || || || || || | ||||| | | |||||| | | ||||
Sbjct 6402 GCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTATCAT 6461
Query 113090 -GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148
| ||| |||||||| |||||||| ||| | ||||||| ||| || |||
Sbjct 6462 CGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGGCAC 6517
Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206
| ||| || || ||||| | || | ||| | | || | |||||||| |||||
Sbjct 6518 TTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGATCG 6575
Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 113264
|||| ||| |||| | ||||| | | ||||| | |||| || || || |||
Sbjct 6576 TGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 6633
Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324
|||| | |||| ||||| | | ||||||| ||||||||| || || |||||
Sbjct 6634 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATGTAC 6693
Query 113325 TACCTCCG 113332
||||||||
Sbjct 6694 TACCTCCG 6701
>seq1268
Length=12646
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166
|||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| |
Sbjct 6920 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 6979
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
| | |||||||| |||| || | || ||||| ||||||||| ||||||||| |||
Sbjct 6980 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 7038
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|| ||| |||| | |||||||||||||| || | ||| | |||||| |||||
Sbjct 7039 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 7098
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319
||| ||||| ||||| ||||| || || |||||
Sbjct 7099 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 7131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620705240808080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |