Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4565 174 2e-38 seq1268 114 2e-20 >seq4565 Length=7484 Score = 174 bits (192), Expect = 2e-38 Identities = 1149/1822 (63%), Gaps = 59/1822 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || |||||||| ||||| || | |||||| |||| Sbjct 6701 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6642 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| || | ||| | |||||| || || ||||| || | || Sbjct 6641 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6582 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||||||||| ||||| | | || ||| ||| |||||||| |||||| Sbjct 6581 GCACCACGATCAGCGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 6522 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | |||||| ||| | ||||||| |||||||||||||| |||||| || Sbjct 6521 TAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCA----TC 6466 Query 109648 ACC-ATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 | | |||| | | |||||| | | ||||| | || | | ||||| | | Sbjct 6465 AGCGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAG 6406 Query 109704 AAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 || ||| ||| || || ||||| ||||| | || || |||||||||| Sbjct 6405 CAGCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTA 6348 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | ||||| ||||| || ||||| ||| || || ||||| | ||| ||||| ||| Sbjct 6347 GAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGC 6288 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 || ||||| | ||| | |||||| |||| ||| | | ||| | | | || Sbjct 6287 ATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGT-TGTTTGATGGATTTCTTCAAGCT 6229 Query 109882 -TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 ||||| || || | | || | || ||| |||||||||| ||||||| | Sbjct 6228 ATCCCAGTCCCAAAGGTCGGTAGGTGTAA-CTC-----CCCACATATCGTATTGAAGTTC 6175 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| | |||| || || | | | |||| || | ||| ||| || | ||| Sbjct 6174 GCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTC 6115 Query 110001 ---GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG 110057 ||| || | | | || || || || ||||| || || || ||| || ||| Sbjct 6114 AACGGACGATGTC---AAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTT---GAG 6061 Query 110058 GCGAGACTCTTCAC---AGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACC 110114 | | ||||| | || || || | | | | | ||| |||| || ||||| Sbjct 6060 GTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAGCATCGGCAAGACC 6001 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 |||||||||| | | || || ||||| | || || || | ||||| Sbjct 6000 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGG 5941 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTC-GTGATTTCA 110232 ||| ||||| ||| |||| | || | | |||| | || | ||| || | || Sbjct 5940 GTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT--GACAACGACTTGAGTAACCTCG 5883 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292 || || || | | ||||| | ||| | | | | | ||| || | ||||||||||| Sbjct 5882 TGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGGAGAGCAATG 5823 Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352 || || | || || || || ||| | | | |||||| | |||||| || ||| Sbjct 5822 GAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCAC 5763 Query 110353 AAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCC 110412 || ||||| || |||| || | |||||| || || || ||||||||||||| Sbjct 5762 AAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCC 5703 Query 110413 TTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACA 110472 || || |||||| |||| | || || || || || | || |||||||| | ||| | Sbjct 5702 TTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGC 5643 Query 110473 TCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 | ||| || || |||| | | |||||||| ||| || | || | Sbjct 5642 TTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAG 5585 Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGG 110589 | ||||| || | || || ||||||| | |||| | || | ||| || | || Sbjct 5584 CTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCATTGGGGCACATTAGT 5526 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||||| | || ||||| | ||||||||| || || |||||||||| || || Sbjct 5525 GTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAG 5466 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 ||||| |||||| || | ||||| | || ||||| || || |||| || || Sbjct 5465 AAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCG 5406 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC----- 110764 | | ||| | |||||| || || |||||||| || | | || | |||| Sbjct 5405 AAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTT 5349 Query 110765 CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || ||| ||| || || | || ||| |||||| || | ||||| || | || || Sbjct 5348 CCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCG 5289 Query 110824 TCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| | ||| || ||||| || | || || | ||||||| || ||| || | Sbjct 5288 TTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGTGGCACGGATTCTGTGAATGTT 5230 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAA 110941 | ||||||||| || || ||| || ||||| ||| |||| ||| |||||| Sbjct 5229 GAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT-TGAGGGTATCATAAA 5171 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 |||||||||| ||| |||| | |||| || ||||| || || | ||| | | | Sbjct 5170 TACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTG 5111 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059 | || || || ||| |||||||| | || || |||| | ||| |||||| Sbjct 5110 GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA--GTATTTGTTGGACATAAG 5053 Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 |||||| || || | ||| | ||| | |||||||||||||| |||||| ||||| Sbjct 5052 GTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 4993 Query 111120 GAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTC 111179 || ||| | || || ||| | |||||||| | || ||||||| ||| Sbjct 4992 GATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTC 4933 Query 111180 TAGGGTCTTGAGACCAAAGTAT 111201 |||||||||| || |||||| Sbjct 4932 GAGGGTCTTGAATCCGAAGTAT 4911 >seq1268 Length=12646 Score = 114 bits (126), Expect = 2e-20 Identities = 349/522 (67%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || ||||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 7431 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 7372 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | | ||| ||||| |||||||| Sbjct 7371 AAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT-ACCAAGAGCGACTAGAAGACG 7313 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||||| || ||||||| |||| |||| | || ||||| || | || ||| Sbjct 7312 ATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 7253 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGA-----T 119440 || ||||| ||| | ||| ||||| | ||||||| ||||| ||| | | || | Sbjct 7252 AGGAAGAGCCTCGGTCAAGAA-TTCTTGTTCGATCTCAACAGCCTCTGTGATGACATCTT 7194 Query 119441 GGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCA 119498 ||| | | || || | || ||| | ||| ||| | || | | | ||| | Sbjct 7193 GGACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CG 7141 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || ||| || |||||||| || |||||||||||||| ||| || |||| | Sbjct 7140 AAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCC 7081 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 || | || | ||||| ||||| ||||| | | || |||| |||||||||||| Sbjct 7080 ATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCC 7021 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCA 119674 || ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| ||| Sbjct 7020 TCAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCA 6962 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||| |||||||| ||| || || ||||| || || || Sbjct 6961 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 6920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588940742424200