Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 174 2e-38
seq1268 114 2e-20
>seq4565
Length=7484
Score = 174 bits (192), Expect = 2e-38
Identities = 1149/1822 (63%), Gaps = 59/1822 (3%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| || || ||||| || || |||||||| ||||| || | |||||| ||||
Sbjct 6701 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6642
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | ||| || | ||| | |||||| || || ||||| || | ||
Sbjct 6641 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6582
Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587
|||||||||||| ||||| | | || ||| ||| |||||||| ||||||
Sbjct 6581 GCACCACGATCAGCGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 6522
Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647
|| | |||||| ||| | ||||||| |||||||||||||| |||||| ||
Sbjct 6521 TAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCA----TC 6466
Query 109648 ACC-ATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703
| | |||| | | |||||| | | ||||| | || | | ||||| | |
Sbjct 6465 AGCGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAG 6406
Query 109704 AAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761
|| ||| ||| || || ||||| ||||| | || || ||||||||||
Sbjct 6405 CAGCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTA 6348
Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821
| ||||| ||||| || ||||| ||| || || ||||| | ||| ||||| |||
Sbjct 6347 GAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGC 6288
Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881
|| ||||| | ||| | |||||| |||| ||| | | ||| | | | ||
Sbjct 6287 ATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGT-TGTTTGATGGATTTCTTCAAGCT 6229
Query 109882 -TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940
||||| || || | | || | || ||| |||||||||| ||||||| |
Sbjct 6228 ATCCCAGTCCCAAAGGTCGGTAGGTGTAA-CTC-----CCCACATATCGTATTGAAGTTC 6175
Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000
|||| | |||| || || | | | |||| || | ||| ||| || | |||
Sbjct 6174 GCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTC 6115
Query 110001 ---GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG 110057
||| || | | | || || || || ||||| || || || ||| || |||
Sbjct 6114 AACGGACGATGTC---AAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTT---GAG 6061
Query 110058 GCGAGACTCTTCAC---AGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACC 110114
| | ||||| | || || || | | | | | ||| |||| || |||||
Sbjct 6060 GTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAGCATCGGCAAGACC 6001
Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174
|||||||||| | | || || ||||| | || || || | |||||
Sbjct 6000 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGG 5941
Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTC-GTGATTTCA 110232
||| ||||| ||| |||| | || | | |||| | || | ||| || | ||
Sbjct 5940 GTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT--GACAACGACTTGAGTAACCTCG 5883
Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292
|| || || | | ||||| | ||| | | | | | ||| || | |||||||||||
Sbjct 5882 TGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGGAGAGCAATG 5823
Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352
|| || | || || || || ||| | | | |||||| | |||||| || |||
Sbjct 5822 GAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCAC 5763
Query 110353 AAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCC 110412
|| ||||| || |||| || | |||||| || || || |||||||||||||
Sbjct 5762 AAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCC 5703
Query 110413 TTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACA 110472
|| || |||||| |||| | || || || || || | || |||||||| | ||| |
Sbjct 5702 TTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGC 5643
Query 110473 TCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530
| ||| || || |||| | | |||||||| ||| || | || |
Sbjct 5642 TTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAG 5585
Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGG 110589
| ||||| || | || || ||||||| | |||| | || | ||| || | ||
Sbjct 5584 CTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCATTGGGGCACATTAGT 5526
Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649
| ||||| | || ||||| | ||||||||| || || |||||||||| || ||
Sbjct 5525 GTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAG 5466
Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709
||||| |||||| || | ||||| | || ||||| || || |||| || ||
Sbjct 5465 AAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCG 5406
Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC----- 110764
| | ||| | |||||| || || |||||||| || | | || | ||||
Sbjct 5405 AAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTT 5349
Query 110765 CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823
|| ||| ||| || || | || ||| |||||| || | ||||| || | || ||
Sbjct 5348 CCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCG 5289
Query 110824 TCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATG 110882
| ||| | ||| || ||||| || | || || | ||||||| || ||| || |
Sbjct 5288 TTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGTGGCACGGATTCTGTGAATGTT 5230
Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAA 110941
| ||||||||| || || ||| || ||||| ||| |||| ||| ||||||
Sbjct 5229 GAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT-TGAGGGTATCATAAA 5171
Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001
|||||||||| ||| |||| | |||| || ||||| || || | ||| | | |
Sbjct 5170 TACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTG 5111
Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059
| || || || ||| |||||||| | || || |||| | ||| ||||||
Sbjct 5110 GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA--GTATTTGTTGGACATAAG 5053
Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119
|||||| || || | ||| | ||| | |||||||||||||| |||||| |||||
Sbjct 5052 GTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 4993
Query 111120 GAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTC 111179
|| ||| | || || ||| | |||||||| | || ||||||| |||
Sbjct 4992 GATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTC 4933
Query 111180 TAGGGTCTTGAGACCAAAGTAT 111201
|||||||||| || ||||||
Sbjct 4932 GAGGGTCTTGAATCCGAAGTAT 4911
>seq1268
Length=12646
Score = 114 bits (126), Expect = 2e-20
Identities = 349/522 (67%), Gaps = 23/522 (4%)
Strand=Plus/Minus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|||||||| || ||||| |||||||| || ||||| || | || |||||||| |||||
Sbjct 7431 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 7372
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326
||||| || || || || || | | | | ||| ||||| ||||||||
Sbjct 7371 AAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT-ACCAAGAGCGACTAGAAGACG 7313
Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386
||||| || ||||||| |||| |||| | || ||||| || | || |||
Sbjct 7312 ATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 7253
Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGA-----T 119440
|| ||||| ||| | ||| ||||| | ||||||| ||||| ||| | | || |
Sbjct 7252 AGGAAGAGCCTCGGTCAAGAA-TTCTTGTTCGATCTCAACAGCCTCTGTGATGACATCTT 7194
Query 119441 GGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCA 119498
||| | | || || | || ||| | ||| ||| | || | | | ||| |
Sbjct 7193 GGACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CG 7141
Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558
|| || ||| || |||||||| || |||||||||||||| ||| || |||| |
Sbjct 7140 AAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCC 7081
Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618
|| | || | ||||| ||||| ||||| | | || |||| ||||||||||||
Sbjct 7080 ATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCC 7021
Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCA 119674
|| ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| |||
Sbjct 7020 TCAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCA 6962
Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716
||| |||||||| ||| || || ||||| || || ||
Sbjct 6961 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 6920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588940742424200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |