Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 244 1e-59
>seq4565
Length=7484
Score = 244 bits (270), Expect = 1e-59
Identities = 1161/1818 (64%), Gaps = 59/1818 (3%)
Strand=Plus/Minus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
||||| |||||||| ||||||||||| || |||||| || | |||||| ||||
Sbjct 6701 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6642
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| || || || |||| || ||||| ||| |||||||| |||
Sbjct 6641 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6582
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767
|||||| | || ||||| | || | | ||| | || | ||||| || ||
Sbjct 6581 GCACCACGATCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 6524
Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827
||| || |||||| ||| |||| || | | || |||||||| ||||| || |
Sbjct 6523 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAG 6464
Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887
|| || | | |||||| | | ||||| | || || | ||||| |||| |
Sbjct 6463 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 6404
Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944
| ||| ||| |||| || ||||| || | | | | ||| |||||||| |
Sbjct 6403 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 6347
Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004
||||| ||||||||||| || || ||| | ||||| | |||| |||||||||||
Sbjct 6346 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 6287
Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064
| || || | | | |||||| || | ||| | || |||||| || ||| | ||
Sbjct 6286 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTAT 6227
Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122
||||||| | | | | ||| | || | |||||||||| ||||||| | |||||
Sbjct 6226 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 6168
Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181
| ||| | ||| || || | |||||||||| ||| | | ||| | ||| |
Sbjct 6167 GAGACAGGTGAG--CCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 6110
Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241
|| || | ||||| || || ||||| ||||| || || | | ||||||||
Sbjct 6109 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 6050
Query 106242 CATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296
|| ||| ||||||| || || | || |||| |||| || |||||||||||
Sbjct 6049 CAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAGACCTTGAAC 5995
Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAA 106355
||| | | | ||||||| || || | ||| ||||| || ||| ||||| ||
Sbjct 5994 ACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGT 5936
Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415
| || ||||||||| ||| | ||| || ||| | | || | || ||||| |
Sbjct 5935 AGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCT 5876
Query 106416 TTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATG 106472
||| |||| |||| | ||| ||||| ||| | |||| || || || || |
Sbjct 5875 TTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAG 5819
Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532
|||| || || ||| ||||| | | ||| || | ||||||||| ||||| |
Sbjct 5818 CCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAAT 5759
Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592
|||| || ||| || || | ||||||||||| ||||| |||||||| ||||||||||
Sbjct 5758 TGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGT 5699
Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGG 106652
| |||||| | || | || ||||| || || | || |||||| | | ||| | |
Sbjct 5698 AAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTT 5639
Query 106653 CGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709
||| | |||| ||| | | || ||| ||| || | ||||| ||||
Sbjct 5638 GGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTT 5582
Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAG 106766
||||||| || || | || | | || || | | ||| || || | || |
Sbjct 5581 CAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTG 5525
Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826
||| | | || ||||| ||||||||||| || || |||||||||| || | |
Sbjct 5524 TCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGA 5465
Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886
| ||||| | || | ||||| | || ||||| ||| | || |||||||| |
Sbjct 5464 AAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGA 5405
Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 106940
| ||| |||||||| ||||||||||||||||| | || | ||||| |
Sbjct 5404 AAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTC 5348
Query 106941 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 107000
|| |||| | || || | || ||| || || || || ||||| || | || || |
Sbjct 5347 CACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGT 5288
Query 107001 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060
|| | ||| || || || || | | |||| | | || |||| |
Sbjct 5287 TGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGA 5228
Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120
|||||||| ||||| || ||||| ||||| | | || || |||| ||||
Sbjct 5227 GACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATAC 5168
Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180
| | || |||||||| | | || |||||||| || | ||| | | |||||
Sbjct 5167 CATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTG 5108
Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239
||||||| ||| || || || | ||||| |||| || | | |||||| || |
Sbjct 5107 TACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTG 5049
Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299
|| ||||| | | | || || || || ||||| || || | ||| |||||||| | |
Sbjct 5048 TAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATC 4989
Query 107300 ATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAG 107358
|| | || || ||| | | |||||||| || |||| || | || ||| ||
Sbjct 4988 ATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAG 4930
Query 107359 GGTTTTGAGACCAAAGTA 107376
||| |||| || |||||
Sbjct 4929 GGTCTTGAATCCGAAGTA 4912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589945482274360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |