Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4565 244 1e-59 >seq4565 Length=7484 Score = 244 bits (270), Expect = 1e-59 Identities = 1161/1818 (64%), Gaps = 59/1818 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || |||||| || | |||||| |||| Sbjct 6701 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6642 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || |||| || ||||| ||| |||||||| ||| Sbjct 6641 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6582 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | ||||| || || Sbjct 6581 GCACCACGATCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 6524 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | || |||||||| ||||| || | Sbjct 6523 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAG 6464 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || || | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 6463 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 6404 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| |||| || ||||| || | | | | ||| |||||||| | Sbjct 6403 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 6347 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||||||||| || || ||| | ||||| | |||| ||||||||||| Sbjct 6346 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 6287 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || |||||| || ||| | || Sbjct 6286 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTAT 6227 Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122 ||||||| | | | | ||| | || | |||||||||| ||||||| | ||||| Sbjct 6226 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 6168 Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | ||| | ||| || || | |||||||||| ||| | | ||| | ||| | Sbjct 6167 GAGACAGGTGAG--CCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 6110 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | ||||| || || ||||| ||||| || || | | |||||||| Sbjct 6109 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 6050 Query 106242 CATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296 || ||| ||||||| || || | || |||| |||| || ||||||||||| Sbjct 6049 CAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAGACCTTGAAC 5995 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAA 106355 ||| | | | ||||||| || || | ||| ||||| || ||| ||||| || Sbjct 5994 ACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGT 5936 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 | || ||||||||| ||| | ||| || ||| | | || | || ||||| | Sbjct 5935 AGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCT 5876 Query 106416 TTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATG 106472 ||| |||| |||| | ||| ||||| ||| | |||| || || || || | Sbjct 5875 TTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAG 5819 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 |||| || || ||| ||||| | | ||| || | ||||||||| ||||| | Sbjct 5818 CCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAAT 5759 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| || ||| || || | ||||||||||| ||||| |||||||| |||||||||| Sbjct 5758 TGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGT 5699 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGG 106652 | |||||| | || | || ||||| || || | || |||||| | | ||| | | Sbjct 5698 AAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTT 5639 Query 106653 CGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 ||| | |||| ||| | | || ||| ||| || | ||||| |||| Sbjct 5638 GGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTT 5582 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAG 106766 ||||||| || || | || | | || || | | ||| || || | || | Sbjct 5581 CAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTG 5525 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | | || ||||| ||||||||||| || || |||||||||| || | | Sbjct 5524 TCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGA 5465 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 | ||||| | || | ||||| | || ||||| ||| | || |||||||| | Sbjct 5464 AAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGA 5405 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 106940 | ||| |||||||| ||||||||||||||||| | || | ||||| | Sbjct 5404 AAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTC 5348 Query 106941 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 107000 || |||| | || || | || ||| || || || || ||||| || | || || | Sbjct 5347 CACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGT 5288 Query 107001 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || | ||| || || || || | | |||| | | || |||| | Sbjct 5287 TGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGA 5228 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||||| ||||| || ||||| ||||| | | || || |||| |||| Sbjct 5227 GACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATAC 5168 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || |||||||| | | || |||||||| || | ||| | | ||||| Sbjct 5167 CATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTG 5108 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 ||||||| ||| || || || | ||||| |||| || | | |||||| || | Sbjct 5107 TACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTG 5049 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | | || || || || ||||| || || | ||| |||||||| | | Sbjct 5048 TAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATC 4989 Query 107300 ATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAG 107358 || | || || ||| | | |||||||| || |||| || | || ||| || Sbjct 4988 ATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAG 4930 Query 107359 GGTTTTGAGACCAAAGTA 107376 ||| |||| || ||||| Sbjct 4929 GGTCTTGAATCCGAAGTA 4912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945482274360