Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq576 161 2e-34 seq257 116 8e-21 seq3874 98.7 2e-15 >seq576 Length=13942 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | ||| Sbjct 10788 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 10847 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||| |||||||| || || || || || ||||||||||| || Sbjct 10848 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 10907 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || |||||||| || || ||||||||| | |||| |||||||| || Sbjct 10908 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGT 10967 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 10968 CAAAGTCTTGACGAAGATCTGCAT 10991 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| || Sbjct 11244 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 11303 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | |||||||| || |||||||| || || ||||| || || || Sbjct 11304 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTT 11363 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || || || ||||| || | ||||| || || Sbjct 11364 GGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 11423 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 11424 GAGAGTCTTGACGA 11437 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||||||||| || || ||||| || | ||||| | ||||| || || ||| Sbjct 11017 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCAAGTTGC 11076 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||| ||||| ||||| || || || || || || ||||| || ||| Sbjct 11077 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTT 11136 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| || ||||| || || || || || | || | |||||||| || Sbjct 11137 GATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTTCCGGTA 11196 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 11197 AGTGTCTTGACGAAGATTTGCAT 11219 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || || ||||| ||||| |||||||| ||||| ||| |||| || | |||||||| Sbjct 11519 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAG-GTACGGCCATCTTC 11577 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || ||||||||||| | || |||||||| || ||||| || || || || || Sbjct 11578 AAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 11637 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| || ||| ||||| || ||||| || Sbjct 11638 AATCTTGCTCTTTACGTTGTCGATGGTATC 11667 >seq257 Length=33499 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| || | ||| |||| || || ||||| ||||| || |||||||| Sbjct 15645 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15586 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || ||||| || || ||||| || || || |||||| || ||| Sbjct 15585 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15526 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || || || || |||||||| | |||||||| || | || || ||||| Sbjct 15525 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15467 >seq3874 Length=1130 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| || Sbjct 118 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 59 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||| || |||||||| || ||||| || || || || || || || ||||| || || Sbjct 58 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109413523249163