Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq576 161 2e-34
seq257 116 8e-21
seq3874 98.7 2e-15
>seq576
Length=13942
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | |||
Sbjct 10788 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 10847
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | ||| |||||||| || || || || || ||||||||||| ||
Sbjct 10848 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 10907
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| |||||| || |||||||| || || ||||||||| | |||| |||||||| ||
Sbjct 10908 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGT 10967
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || ||||| | |||||
Sbjct 10968 CAAAGTCTTGACGAAGATCTGCAT 10991
Score = 129 bits (142), Expect = 1e-24
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| ||
Sbjct 11244 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 11303
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| |||||||| | |||||||| || |||||||| || || ||||| || || ||
Sbjct 11304 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTT 11363
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| || || || ||||| || | ||||| || ||
Sbjct 11364 GGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 11423
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 11424 GAGAGTCTTGACGA 11437
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || ||||||||||| || || ||||| || | ||||| | ||||| || || |||
Sbjct 11017 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCAAGTTGC 11076
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || |||||||| ||||| ||||| || || || || || || ||||| || |||
Sbjct 11077 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTT 11136
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| ||||| || ||||| || || || || || | || | |||||||| ||
Sbjct 11137 GATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTTCCGGTA 11196
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 11197 AGTGTCTTGACGAAGATTTGCAT 11219
Score = 102 bits (112), Expect = 2e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
|| || || ||||| ||||| |||||||| ||||| ||| |||| || | ||||||||
Sbjct 11519 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAG-GTACGGCCATCTTC 11577
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || ||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 11578 AAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 11637
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| || ||| ||||| || ||||| ||
Sbjct 11638 AATCTTGCTCTTTACGTTGTCGATGGTATC 11667
>seq257
Length=33499
Score = 116 bits (128), Expect = 8e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|||||||| ||||| || | ||| |||| || || ||||| ||||| || ||||||||
Sbjct 15645 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15586
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||||||||| || ||||| || || ||||| || || || |||||| || |||
Sbjct 15585 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15526
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || |||||||| | |||||||| || | || || |||||
Sbjct 15525 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15467
>seq3874
Length=1130
Score = 98.7 bits (108), Expect = 2e-15
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| ||
Sbjct 118 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 59
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053
||| || |||||||| || ||||| || || || || || || || ||||| || ||
Sbjct 58 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGAT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109413523249163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |