Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq576 100 2e-16 seq257 91.5 1e-13 seq3874 84.2 1e-11 >seq576 Length=13942 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||||||||| || || ||||| ||| |||| ||| Sbjct 10783 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 10842 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || | ||| || ||||| | || | ||||||||||| | Sbjct 10843 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 10902 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | || || || | || ||||| ||| Sbjct 10903 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 10962 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || |||||||||||| Sbjct 10963 CCAGTCAAAGTCTTGACGAAGATCTGCATA 10992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| |||||||| ||||| ||||| || || | || |||| || Sbjct 11011 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 11070 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || ||||||||||| | || | |||||||| || Sbjct 11071 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 11130 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| ||| |||| |||| | || | |||||| || | || || | Sbjct 11131 ATCTTTGATTTCACGTTGTCGATGGTATC---TGAC--GACTCAACCTCCAATGTGATTG 11185 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || ||||| || ||||| |||||| Sbjct 11186 TCTTTCCGGTAAGTGTCTTGACGAAGATTTGCATA 11220 >seq257 Length=33499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || |||||||| ||||| |||||| ||||| | || || || || |||||||| || || Sbjct 15645 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15586 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||||| ||||| | || | ||||||||||| ||||| ||||| | Sbjct 15585 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15526 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| || ||| || || | ||| ||||| |||||||| || ||||| || ||| Sbjct 15525 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAG 15466 >seq3874 Length=1130 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| || || ||||| ||||| |||||| | ||| |||| || Sbjct 123 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 64 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || ||||| || || || |||||||| || | || | ||||||||||| Sbjct 63 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324614652455592