Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 159 4e-34
seq1268 82.4 9e-11
>seq4565
Length=7484
Score = 159 bits (176), Expect = 4e-34
Identities = 301/440 (68%), Gaps = 2/440 (0%)
Strand=Plus/Minus
Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185
||||| || || ||||| |||| | | ||||||||||||||||| || ||||| | || |
Sbjct 5582 TCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTC 5523
Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244
|||||| | | |||| || | |||| || | ||| || ||||| | || ||| ||
Sbjct 5522 CAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACA-AGGCATAGAA 5464
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| ||| | | | | |||||| ||||| ||| || || || || || || |
Sbjct 5463 AAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAA 5404
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
| ||| || ||||| || || | ||| | ||| | | |||| || || || || || ||
Sbjct 5403 AACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACC 5344
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
||| || | ||||| ||||| || || |||||| || ||| || || || || || ||
Sbjct 5343 TTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGA 5284
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484
|||| ||||| || | || || ||| | || | || | ||| | |||
Sbjct 5283 GTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACC 5224
Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544
||||| || || ||||||| || | |||||| || |||||||||||||| || ||
Sbjct 5223 AATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCATC 5164
Query 48545 TATACTATCATCTATCATAT 48564
|||||||| || ||||||
Sbjct 5163 AATACTATCCTCCTTCATAT 5144
>seq1268
Length=12646
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
||||| || || || | ||||| ||||| || | || || | |||||| ||||||||
Sbjct 7104 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCG 7045
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
||||||||| ||||| || || || || || ||||||||||| || | | || |
Sbjct 7044 AATGATCCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAG 6985
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172
||| | || | ||||||||| | | ||||| || || ||||| ||
Sbjct 6984 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 6935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562075150761960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |