Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq358 131 1e-24 seq4764 98.7 8e-15 seq2467 98.7 8e-15 >seq358 Length=3727 Score = 131 bits (144), Expect = 1e-24 Identities = 316/475 (67%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 1364 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 1423 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 1424 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 1483 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 1484 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 1543 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 1544 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 1603 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 1604 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 1661 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 1662 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 1721 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 1722 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 1781 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || |||||||| ||||| |||| || || Sbjct 1782 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 1836 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 2375 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 2434 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 2435 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 2494 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 2495 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 2554 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 2555 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 2614 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 2615 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 2674 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 2675 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 2734 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 2735 AACGGTATCATGAATGTCTCTGCT 2758 >seq4764 Length=11114 Score = 98.7 bits (108), Expect = 8e-15 Identities = 247/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| ||||| |||||||| | || || || | ||||| ||| | Sbjct 10477 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 10536 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| ||||| | || ||||| ||||| || || | || | | ||| | Sbjct 10537 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 10596 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073 | |||| ||| || ||| | | | | || || || | || || || | Sbjct 10597 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 10655 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||||| | | ||| | || || || |||||||| || |||| || || |||||||| Sbjct 10656 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 10715 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||||||| | ||||| || ||| | | || || | ||||| || || || Sbjct 10716 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 10775 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || | |||| |||| || |||||||||||||| || ||||| || ||||||| | Sbjct 10776 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 10835 Query 552254 TATTCTTTCTGGA 552266 ||| || || ||| Sbjct 10836 TATCCTCTCAGGA 10848 >seq2467 Length=41429 Score = 98.7 bits (108), Expect = 8e-15 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| || | |||||||| |||||| | | || | || ||| Sbjct 22138 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 22194 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||| ||| | | || || || | ||||| | || | |||||||| | Sbjct 22195 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 22250 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || ||||||| ||||||| || | ||| ||||| || ||| ||| Sbjct 22251 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 22310 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||||||| | || || || | || || ||| | | || |||||| | | Sbjct 22311 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 22370 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | || || ||||| || || | ||||||| || | || || Sbjct 22371 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 22430 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 |||||| || || || ||||| || || |||||||||||| | ||||| | || ||||| Sbjct 22431 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 22490 Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| ||||| || || ||| |||| || Sbjct 22491 TGGAATCTTGAAGGTTACCGCTGGTGACAA 22520 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 21002 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 21061 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 21062 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 21121 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 21122 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 21159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029042736081610