Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1268 136 7e-27 >seq1268 Length=12646 Score = 136 bits (150), Expect = 7e-27 Identities = 347/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || ||||| ||||| |||||||||||||| || | | ||||||||||| Sbjct 7435 CTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 7376 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||| ||||||| | || |||||| | || ||| | | || | Sbjct 7375 CATGAAGTCGAATGGGTTGGCAGACTTGTACACCT-TCTCGTTACCAAGAGCGACTAGAA 7317 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| || ||| |||||||||||| ||| | | | ||||||||| | || | Sbjct 7316 GACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTG 7257 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| | || ||||| || | || || | || |||| || || || | | Sbjct 7256 -CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACA 7198 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130 | ||| |||| | | ||| | | ||||||| || |||| | | Sbjct 7197 T-CTT------GGACA--GCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGAAGAGGAGG 7147 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| | || | ||||| || ||| ||||||| | |||||||| |||| Sbjct 7146 CACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGA 7087 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||| ||| | || | || ||||||||||| || | ||||| || ||| ||||||| Sbjct 7086 CCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAG 7027 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || || | || | || | || ||| |||||| Sbjct 7026 ATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGA 6967 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | |||||||| || |||||||| ||||| || Sbjct 6966 ATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGG 6926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931477036117760