Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 136 7e-27
>seq1268
Length=12646
Score = 136 bits (150), Expect = 7e-27
Identities = 347/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || ||||| ||||| |||||||||||||| || | | |||||||||||
Sbjct 7435 CTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 7376
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957
||||||| ||| ||||||| | || |||||| | || ||| | | || |
Sbjct 7375 CATGAAGTCGAATGGGTTGGCAGACTTGTACACCT-TCTCGTTACCAAGAGCGACTAGAA 7317
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| |||| || ||| |||||||||||| ||| | | | ||||||||| | || |
Sbjct 7316 GACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTG 7257
Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| | || ||||| || | || || | || |||| || || || | |
Sbjct 7256 -CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACA 7198
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130
| ||| |||| | | ||| | | ||||||| || |||| | |
Sbjct 7197 T-CTT------GGACA--GCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGAAGAGGAGG 7147
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|| || ||||| | || | ||||| || ||| ||||||| | |||||||| ||||
Sbjct 7146 CACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGA 7087
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|||| ||| | || | || ||||||||||| || | ||||| || ||| |||||||
Sbjct 7086 CCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAG 7027
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310
|||||||| || || || || || || | || | || | || ||| ||||||
Sbjct 7026 ATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGA 6967
Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||| | |||||||| || |||||||| ||||| ||
Sbjct 6966 ATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGG 6926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931477036117760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |