Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq358 165 5e-35
seq576 105 4e-17
seq257 93.3 3e-13
>seq358
Length=3727
Score = 165 bits (182), Expect = 5e-35
Identities = 332/488 (68%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| |||||||| || ||||||| || || | ||| |||| || ||
Sbjct 1364 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 1423
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| |||| ||| || |||||||| || || | |||| || || ||| || ||
Sbjct 1424 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 1483
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | |||| |||||||| || | || | |||||| |||||
Sbjct 1484 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 1543
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| || | ||| || || ||| || |||| |
Sbjct 1544 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 1603
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || |||| ||||| |||| ||| |||| || || ||||| || | ||
Sbjct 1604 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 1661
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | || || ||| | || || || | || | | || || | |||
Sbjct 1662 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 1720
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||||||||| || | || || ||||||||||| || |||||||| || || ||
Sbjct 1721 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 1780
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| |
Sbjct 1781 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGGTTTG 1840
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1841 GACAAGAA 1848
Score = 111 bits (122), Expect = 1e-18
Identities = 451/700 (64%), Gaps = 23/700 (3%)
Strand=Plus/Plus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||| || |||||||||||||| | || || || || | || || |
Sbjct 2069 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 2128
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605
| ||| | || ||||| || || || || || || || |||| || || | |||
Sbjct 2129 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 2187
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
|| || || |||| || ||||| || || | | || || || | || ||
Sbjct 2188 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 2247
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725
| || | || | |||||||| |||||| || || || | || || ||||| ||
Sbjct 2248 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 2307
Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780
| || ||| || |||| ||| ||||| || || || ||||| || |
Sbjct 2308 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 2362
Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838
|| |||| | || |||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 2363 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 2420
Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893
| | || ||| | ||| | || ||| || | || | ||| | || || |
Sbjct 2421 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 2478
Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953
||| | || | ||| | || || | ||| || ||||| || || ||| || | ||
Sbjct 2479 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 2538
Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013
|| | || || ||| || || |||| || || || | || ||||| ||| |
Sbjct 2539 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 2598
Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073
||| || ||| |||| || ||||| |||| ||| || || || ||| || ||
Sbjct 2599 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 2658
Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133
|| || | || |||||||| |||||||| | || ||||| ||||| || || ||
Sbjct 2659 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 2718
Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| ||||||||||| || ||||| | ||||| |||||
Sbjct 2719 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 2758
>seq576
Length=13942
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | || | || || || || || || ||||||| |||||
Sbjct 10770 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 10829
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | |||||||||||||| || | || ||||| || || || || ||
Sbjct 10830 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 10889
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||||||||| |||||| ||||| ||||| | | | | || |||
Sbjct 10890 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 10949
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | |||||| ||||| || ||
Sbjct 10950 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 10988
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||| ||||| ||||| | || || || | ||||||
Sbjct 10998 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 11057
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||| |||||||| ||||||||||| || || || || || ||
Sbjct 11058 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 11117
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| ||||| |||||| ||| || || || ||||| | | | || | |||
Sbjct 11118 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 11177
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| || ||||| ||||| |||||
Sbjct 11178 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 11216
>seq257
Length=33499
Score = 93.3 bits (102), Expect = 3e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || ||||||||||| || || || | ||||||||| || || |||||||| ||||||
Sbjct 15612 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 15553
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| ||||||||||||| | |||||||| ||
Sbjct 15552 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 15493
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 15492 GTCTTTCCCGTAAGGGTCTTGACGAA 15467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267973776553772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |