Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4565 239 5e-58 >seq4565 Length=7484 Score = 239 bits (264), Expect = 5e-58 Identities = 1181/1854 (64%), Gaps = 67/1854 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | || |||| || |||||||| | | Sbjct 4912 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 4970 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| |||||| | ||| ||||||| || || | || || ||||| || || || || Sbjct 4971 AGAACGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 5030 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 | | | ||||| ||| || |||||| | | || |||| ||||| | || | Sbjct 5031 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 5089 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||| |||||||||||| | | ||| | || |||||||| || | | | Sbjct 5090 CACTTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGA 5149 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 ||||||| || | ||||| |||| || || | | ||||| ||||| || Sbjct 5150 AGGAGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 5209 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 ||||| |||||||| | |||| || | | |||| | | || | Sbjct 5210 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 5269 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| | || | || || | || ||||| || || || || ||| || Sbjct 5270 GTACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTA 5329 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616 | || || | |||| || ||||| ||| ||| || ||||| | || Sbjct 5330 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 5385 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | |||||||| || | ||| ||||| || | ||||| Sbjct 5386 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAA 5445 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || | ||||| || | || |||||||||| || || ||||||||||| ||| Sbjct 5446 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 5505 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793 || || | | ||| | || | || || ||| | | || || | | || Sbjct 5506 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 5562 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850 | || || ||||||||||| ||||| | ||||| |||| ||||||| | Sbjct 5563 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 5622 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 || ||| | |||| | ||||| | | |||||| | | || || ||||| Sbjct 5623 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACC 5679 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 |||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 5680 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 5739 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||||| ||| | ||||| |||||| | || ||| | | ||||| Sbjct 5740 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 5799 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087 ||| || || ||||| || || || || |||| | ||| ||||| ||| Sbjct 5800 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 5856 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | |||| |||| |||| ||||| || | || | | ||| || ||| | ||| Sbjct 5857 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 5916 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||||| || | || ||||| ||| || ||||| ||| | || || Sbjct 5917 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 5975 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265 ||||||| | | | |||||||||||||| || |||| |||| || | || || Sbjct 5976 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-----CTTTTTTGGCTCTTCGA 6030 Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 ||||||| ||| |||||||||| | | || || ||||| ||||| || || Sbjct 6031 TTACCATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTAC 6090 Query 76322 CACGCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379 ||||| | || || |||| || | ||| | | ||| |||||||||| | Sbjct 6091 CACGCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACCT 6148 Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439 || || || || | || | || | ||||| | |||||||||| | || | ||| Sbjct 6149 ACGAAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCT 6207 Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | | | ||||||||| | ||| || |||||| | | ||| | || ||| Sbjct 6208 ACCGACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAAC 6267 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 ||| | | | || || |||||||||||| |||| | ||||| | ||| || || Sbjct 6268 AGTTTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAG 6327 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 ||||||||||||||||| | ||||||||| | | | | || || || || Sbjct 6328 TGCTTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAA 6387 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 |||| ||| || |||| || || | || || | ||||| | | ||| Sbjct 6388 GTTGTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATG 6447 Query 76679 AAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734 ||| | | |||| | ||| |||||||| |||||||| || | | || |||| Sbjct 6448 AAGAACCGTATCATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGC 6503 Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGAC 76792 ||| |||||| || ||| || || ||||| | || | ||| | | || | Sbjct 6504 TGACATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAA 6561 Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGG 76850 |||||||| ||||||||| ||| |||| | ||||| | | ||||| | |||| Sbjct 6562 ATGGCCGCTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGA 6619 Query 76851 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910 || || || ||| |||| | |||| |||||| | || |||||| ||| |||| Sbjct 6620 AAGACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCA 6679 Query 76911 AAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 | |||||||||||||| ||||| | | ||| | || ||| |||||||||| Sbjct 6680 AGACCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 6733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533887852320