Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 239 5e-58
>seq4565
Length=7484
Score = 239 bits (264), Expect = 5e-58
Identities = 1181/1854 (64%), Gaps = 67/1854 (4%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| || |||| ||||| ||| || | || |||| || |||||||| | |
Sbjct 4912 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 4970
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| |||||| | ||| ||||||| || || | || || ||||| || || || ||
Sbjct 4971 AGAACGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 5030
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323
| | | ||||| ||| || |||||| | | || |||| ||||| | || |
Sbjct 5031 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 5089
Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383
| || ||| |||||||||||| | | ||| | || |||||||| || | | |
Sbjct 5090 CACTTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGA 5149
Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
||||||| || | ||||| |||| || || | | ||||| ||||| ||
Sbjct 5150 AGGAGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 5209
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
||||| |||||||| | |||| || | | |||| | | || |
Sbjct 5210 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 5269
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| || || ||| | || | || || | || ||||| || || || || ||| ||
Sbjct 5270 GTACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTA 5329
Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616
| || || | |||| || ||||| ||| ||| || ||||| | ||
Sbjct 5330 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 5385
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|| ||||| || ||| | | |||||||| || | ||| ||||| || | |||||
Sbjct 5386 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAA 5445
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| || | ||||| || | || |||||||||| || || ||||||||||| |||
Sbjct 5446 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 5505
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793
|| || | | ||| | || | || || ||| | | || || | | ||
Sbjct 5506 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 5562
Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850
| || || ||||||||||| ||||| | ||||| |||| ||||||| |
Sbjct 5563 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 5622
Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
|| ||| | |||| | ||||| | | |||||| | | || || |||||
Sbjct 5623 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACC 5679
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 5680 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 5739
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || || ||||| ||| | ||||| |||||| | || ||| | | |||||
Sbjct 5740 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 5799
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087
||| || || ||||| || || || || |||| | ||| ||||| |||
Sbjct 5800 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 5856
Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147
| |||| |||| |||| ||||| || | || | | ||| || ||| | |||
Sbjct 5857 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 5916
Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206
||||||||| || | || ||||| ||| || ||||| ||| | || ||
Sbjct 5917 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 5975
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265
||||||| | | | |||||||||||||| || |||| |||| || | || ||
Sbjct 5976 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-----CTTTTTTGGCTCTTCGA 6030
Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321
||||||| ||| |||||||||| | | || || ||||| ||||| || ||
Sbjct 6031 TTACCATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTAC 6090
Query 76322 CACGCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379
||||| | || || |||| || | ||| | | ||| |||||||||| |
Sbjct 6091 CACGCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACCT 6148
Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439
|| || || || | || | || | ||||| | |||||||||| | || | |||
Sbjct 6149 ACGAAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCT 6207
Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498
| | | | ||||||||| | ||| || |||||| | | ||| | || |||
Sbjct 6208 ACCGACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAAC 6267
Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558
||| | | | || || |||||||||||| |||| | ||||| | ||| || ||
Sbjct 6268 AGTTTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAG 6327
Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618
||||||||||||||||| | ||||||||| | | | | || || || ||
Sbjct 6328 TGCTTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAA 6387
Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678
|||| ||| || |||| || || | || || | ||||| | | |||
Sbjct 6388 GTTGTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATG 6447
Query 76679 AAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734
||| | | |||| | ||| |||||||| |||||||| || | | || ||||
Sbjct 6448 AAGAACCGTATCATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGC 6503
Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGAC 76792
||| |||||| || ||| || || ||||| | || | ||| | | || |
Sbjct 6504 TGACATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAA 6561
Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGG 76850
|||||||| ||||||||| ||| |||| | ||||| | | ||||| | ||||
Sbjct 6562 ATGGCCGCTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGA 6619
Query 76851 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910
|| || || ||| |||| | |||| |||||| | || |||||| ||| ||||
Sbjct 6620 AAGACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCA 6679
Query 76911 AAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
| |||||||||||||| ||||| | | ||| | || ||| ||||||||||
Sbjct 6680 AGACCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 6733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596533887852320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |