Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq576 95.1 2e-14
seq1268 91.5 2e-13
>seq576
Length=13942
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || ||||||||||| || |||||||| ||||| ||| ||
Sbjct 10991 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 10932
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || || || ||||| || || || || || || || |||
Sbjct 10931 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 10872
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||| || |||||| | || ||| ||||||| | || ||||| ||
Sbjct 10871 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 10812
Query 156003 AT 156004
||
Sbjct 10811 AT 10810
>seq1268
Length=12646
Score = 91.5 bits (100), Expect = 2e-13
Identities = 192/286 (67%), Gaps = 3/286 (1%)
Strand=Plus/Minus
Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481
|| || || || || ||||| | | ||| || |||| || || ||| | |||||
Sbjct 6831 TCCTTAATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATA 6772
Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541
|| || |||| || || | | ||||||||| ||||| || | | || | ||
Sbjct 6771 ATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCG 6712
Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601
|| | ||||| || ||||| ||||| | | |||||| ||||| | || | |||
Sbjct 6711 ACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATG 6652
Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658
|||| |||| ||| ||||| ||||| ||| || | | || ||||| | ||
Sbjct 6651 AAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCG 6592
Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704
| ||||| | |||||| ||||||| ||||||| |||||||||||
Sbjct 6591 ATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTT 6546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731828188312400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |