Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq576 95.1 2e-14 seq1268 91.5 2e-13 >seq576 Length=13942 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || |||||||| ||||| ||| || Sbjct 10991 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 10932 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| || || || || || || || ||| Sbjct 10931 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 10872 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || |||||| | || ||| ||||||| | || ||||| || Sbjct 10871 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 10812 Query 156003 AT 156004 || Sbjct 10811 AT 10810 >seq1268 Length=12646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || || ||||| | | ||| || |||| || || ||| | ||||| Sbjct 6831 TCCTTAATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATA 6772 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 || || |||| || || | | ||||||||| ||||| || | | || | || Sbjct 6771 ATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCG 6712 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 || | ||||| || ||||| ||||| | | |||||| ||||| | || | ||| Sbjct 6711 ACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATG 6652 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658 |||| |||| ||| ||||| ||||| ||| || | | || ||||| | || Sbjct 6651 AAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCG 6592 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | ||||| | |||||| ||||||| ||||||| ||||||||||| Sbjct 6591 ATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTT 6546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731828188312400