Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq576 123 5e-23 >seq576 Length=13942 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || || || ||||| ||| || || || |||||||| Sbjct 10764 ACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGA 10823 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| |||| ||||| || || ||||||||||| |||| |||||| || ||||| Sbjct 10824 AAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGG 10883 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || || ||||| || | |||||||||||| || Sbjct 10884 GATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 10943 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | |||||||| || ||||| || || || | || |||||||| Sbjct 10944 TTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 10991 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| | || | |||||| ||| || || || Sbjct 10990 ATACCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCT 11049 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || |||| || | ||| |||||||||||||| | | || || || ||| Sbjct 11050 GATAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGT 11109 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| || || || | ||||||||| || Sbjct 11110 GGGATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCA 11169 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || || || | ||| || | || || ||||| Sbjct 11170 ACCTCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984419593230150