Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 168 2e-36
seq1268 113 1e-19
seq4403 100 8e-16
seq670 100 8e-16
>seq4565
Length=7484
Score = 168 bits (186), Expect = 2e-36
Identities = 573/880 (65%), Gaps = 17/880 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| || ||||| || || || |||||||| | ||||| |||||
Sbjct 5784 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 5725
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| |||| || ||||||||||| || ||| |||| |||| ||||| | || ||
Sbjct 5724 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGC 5665
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | |||| || || |||| ||| ||||||
Sbjct 5664 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 5605
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | ||||| | ||| ||| | || || || || |||| || |||||
Sbjct 5604 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 5547
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|| | || |||||| | || | |||| || | || ||||||| ||| || |
Sbjct 5546 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 5489
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984
||| ||| | ||||||||||| || | | | ||| || || | ||||||
Sbjct 5488 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCGTGG 5430
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || || ||| | || ||||| ||||| | |||
Sbjct 5429 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5370
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
|| |||| | |||| ||||| || || || || | |||||| |||||||| ||
Sbjct 5369 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5310
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159
| |||||| || | || || ||||| | || ||||| || |||| ||||| |||||
Sbjct 5309 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 5252
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | | ||||| | || |||||||| || | |||||| || ||| |
Sbjct 5251 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 5192
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
|| ||| | |||| ||||||| |||||| ||| || | ||| | || |||
Sbjct 5191 ATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGC 5132
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | || | | ||||||| |||||| ||| |||||||| | || || | |
Sbjct 5131 ATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 5072
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399
| || || || |||||| | ||| ||||| | |||| | || |||||||
Sbjct 5071 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 5012
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | | || | ||| ||| ||||| ||||| ||| ||| |||||| | ||
Sbjct 5011 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTC 4952
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| |||||||| | || || || || || || ||||| ||
Sbjct 4951 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 4912
>seq1268
Length=12646
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | |
Sbjct 6924 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6983
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||||||||||| || |||||||| || |||||||| | |
Sbjct 6984 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 7043
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||||| || ||||| || |||||||| | | |||| || ||| || || |
Sbjct 7044 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7103
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | || || | || || ||||| || ||
Sbjct 7104 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 7143
>seq4403
Length=56808
Score = 100 bits (110), Expect = 8e-16
Identities = 115/152 (76%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || |||||||||||| |||||||| || || || ||||| | |||||| |
Sbjct 17155 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 17214
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955
|| | | |||||| ||||| |||| || | ||| |||| | || |||||||||||
Sbjct 17215 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 17271
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| ||||||||||||||
Sbjct 17272 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 17303
>seq670
Length=24159
Score = 100 bits (110), Expect = 8e-16
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || |
Sbjct 16311 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 16252
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|| || | || | || | ||||||||||| ||| || ||||||| || ||||| |||
Sbjct 16251 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 16192
Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| || || |||| ||||| || | | ||||| ||| |||| | |||||||| |
Sbjct 16191 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 16134
Query 289205 TCTTACCTGTTCC 289217
| ||||| || ||
Sbjct 16133 TTTTACCGGTACC 16121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471727290651893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |