Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4565 168 2e-36 seq1268 113 1e-19 seq4403 100 8e-16 seq670 100 8e-16 >seq4565 Length=7484 Score = 168 bits (186), Expect = 2e-36 Identities = 573/880 (65%), Gaps = 17/880 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 5784 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 5725 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||| || ||||||||||| || ||| |||| |||| ||||| | || || Sbjct 5724 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGC 5665 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || |||| ||| |||||| Sbjct 5664 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 5605 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | ||||| | ||| ||| | || || || || |||| || ||||| Sbjct 5604 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 5547 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | || |||||| | || | |||| || | || ||||||| ||| || | Sbjct 5546 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 5489 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984 ||| ||| | ||||||||||| || | | | ||| || || | |||||| Sbjct 5488 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCGTGG 5430 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || || ||| | || ||||| ||||| | ||| Sbjct 5429 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5370 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | |||| ||||| || || || || | |||||| |||||||| || Sbjct 5369 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5310 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159 | |||||| || | || || ||||| | || ||||| || |||| ||||| ||||| Sbjct 5309 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 5252 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || | | ||||| | || |||||||| || | |||||| || ||| | Sbjct 5251 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 5192 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 || ||| | |||| ||||||| |||||| ||| || | ||| | || ||| Sbjct 5191 ATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGC 5132 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | || | | ||||||| |||||| ||| |||||||| | || || | | Sbjct 5131 ATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 5072 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | || || || |||||| | ||| ||||| | |||| | || ||||||| Sbjct 5071 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 5012 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | | || | ||| ||| ||||| ||||| ||| ||| |||||| | || Sbjct 5011 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTC 4952 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | || || || || || || ||||| || Sbjct 4951 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 4912 >seq1268 Length=12646 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | | Sbjct 6924 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6983 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| || |||||||| || |||||||| | | Sbjct 6984 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 7043 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || ||||| || |||||||| | | |||| || ||| || || | Sbjct 7044 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7103 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | || || | || || ||||| || || Sbjct 7104 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 7143 >seq4403 Length=56808 Score = 100 bits (110), Expect = 8e-16 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||||||| |||||||| || || || ||||| | |||||| | Sbjct 17155 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 17214 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955 || | | |||||| ||||| |||| || | ||| |||| | || ||||||||||| Sbjct 17215 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 17271 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||||||||||| Sbjct 17272 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 17303 >seq670 Length=24159 Score = 100 bits (110), Expect = 8e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || | Sbjct 16311 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 16252 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | || | ||||||||||| ||| || ||||||| || ||||| ||| Sbjct 16251 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 16192 Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || || |||| ||||| || | | ||||| ||| |||| | |||||||| | Sbjct 16191 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 16134 Query 289205 TCTTACCTGTTCC 289217 | ||||| || || Sbjct 16133 TTTTACCGGTACC 16121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471727290651893