Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1911 127 2e-23 seq2279 111 2e-18 seq1268 91.5 2e-12 >seq1911 Length=12574 Score = 127 bits (140), Expect = 2e-23 Identities = 128/164 (78%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| | |||| ||| | ||||| ||| | ||||||||| | || || || | Sbjct 6909 GTGGGACCAAAGGTTTATGCAA-GTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTG 6967 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 | ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| |||| Sbjct 6968 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 7027 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||| |||||| | || | || ||||| ||||| || |||||| Sbjct 7028 TCAAAGGCAAGACTCCAAAAGAAATCCGAAAGACATTCAACATC 7071 >seq2279 Length=16572 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| | || ||||| Sbjct 11040 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 10981 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 10980 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 10932 >seq1268 Length=12646 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 7440 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 7381 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||| ||| || ||||||| Sbjct 7380 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACT 7321 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || ||||| || ||||||||||| || ||| | | ||||||||||| | Sbjct 7320 AGA--AGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAA 7263 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| || |||| |||||||| || ||||| || Sbjct 7262 GAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGA 7203 Query 868929 TGA 868931 ||| Sbjct 7202 TGA 7200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106746192233113