Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq358 206 2e-47
seq3796 87.8 1e-11
seq2467 87.8 1e-11
>seq358
Length=3727
Score = 206 bits (228), Expect = 2e-47
Identities = 898/1402 (64%), Gaps = 19/1402 (1%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || ||
Sbjct 2757 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 2698
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||||||||| || || | | || |||| ||| || || || ||
Sbjct 2697 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 2638
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| ||| ||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 2637 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 2578
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || ||| || || || ||||| || ||||| | | ||| | ||||||
Sbjct 2577 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 2518
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| |||||||| || || | ||||||||| | || | |||||| | || | ||
Sbjct 2517 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 2458
Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | || || || | || | |||| || ||||| || || | ||||| ||
Sbjct 2457 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 2398
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 2397 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 2338
Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 2337 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 2281
Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 2280 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 2222
Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017
| || || | |||| |||||||| ||||| ||| | ||| | || | |
Sbjct 2221 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 2163
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || || || ||||| | ||| || | ||| || | || || | || || || || |
Sbjct 2162 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 2103
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 2102 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 2044
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 2043 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1984
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || ||||| ||||| | ||| | || | || | | |||| || | || ||
Sbjct 1983 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 1924
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316
|||| | ||| |||| |||||| |||||| ||||| | ||| || || || || ||
Sbjct 1923 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 1864
Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376
|| || || || || | ||| || |||| ||||| ||||| || || ||
Sbjct 1863 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 1804
Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436
|| || | | |||||| ||||| || || ||||||||||| |||||||| | |||
Sbjct 1803 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 1744
Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495
|| ||| | || ||||| |||||||| | || || | |||| || | || | ||
Sbjct 1743 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACGGTTCCACCGAGGTA 1685
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | |||| || || | ||| || || |||| ||| || | |
Sbjct 1684 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 1625
Query 282556 TTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
|||||| | || |||| | ||||||| ||| || ||| | || |
Sbjct 1624 TTGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 1566
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| || ||||| | | |||||||| | ||| || | |||| || | | ||| |
Sbjct 1565 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 1506
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || | || || || || || | || |||| | || || |
Sbjct 1505 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 1446
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || |
Sbjct 1445 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 1386
Query 282795 CTTGATCATTCGCAATAATTTC 282816
|||| || || || ||||||||
Sbjct 1385 CTTGGTCGTTGGCGATAATTTC 1364
>seq3796
Length=28140
Score = 87.8 bits (96), Expect = 1e-11
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
|| || |||||||| | | ||||| ||||||||||||||||| ||| | ||||| |||
Sbjct 9796 GGAAAGGAAGGTCGGCTGCGTGGAAACTTGATGGGAAAGCGTGTGGATTTCTCTGCTCGT 9855
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| ||||||||| ||||||||| | | ||| | || || ||||| || | | |||
Sbjct 9856 ACCGTTATTACTGGTGATCCTAACTTATCGCTCGACGAGGTCGGTGTGCCCCGAAGTATC 9915
Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455
|| | || || || | ||||| ||||| || ||||| |||
Sbjct 9916 GCCAGAATCCTGACATACCCCGAAACCGTAACTCCACTCAATATCGAT 9963
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191
|||||| |||||||| | |||||||||||||||||| | || |||| || | || ||
Sbjct 11238 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 11297
Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251
|| || |||||||| |||||| | |||||||| ||||||||| | | |
Sbjct 11298 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAAGCTCTTGAAGATGTCATGGCGAA 11357
Query 435252 ATATGATGGTACAGTGAGAAA 435272
|||||| |||||||| ||||
Sbjct 11358 ATATGACGGTACAGTCCGAAA 11378
>seq2467
Length=41429
Score = 87.8 bits (96), Expect = 1e-11
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|||||| || || || |||| || | ||||| || | |||||||||||||| | ||
Sbjct 21199 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 21140
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| |||| || || || | |||||||| ||||| | || | ||||| || || |
Sbjct 21139 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 21080
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
| ||| |||||||| || |||||| ||||| || ||| | || ||||| | |||
Sbjct 21079 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 21020
Query 282868 AATACCAATAGCAATTTT 282885
||||| || | |||||
Sbjct 21019 GATACCGATGACTATTTT 21002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740395280338314
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |