Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 120 4e-21
>seq1268
Length=12646
Score = 120 bits (132), Expect = 4e-21
Identities = 210/300 (70%), Gaps = 13/300 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| || || ||||| || || ||| |||||
Sbjct 6538 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACT 6596
Query 1455835 TCG----GCGCCGACACGGTCCACTGGG-TGTCG--CTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| | ||| | | || | || || |||||| |||||
Sbjct 6597 TGTCAAAGGACCTTCACGAT----TGGAATAACAAACTCAATGATGATGAGCGCTATTTC 6652
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||||||||||| || || ||| || ||| || || || ||||||||| |
Sbjct 6653 ATCTCTCACGTCCTCGCATTCTT-CGCAGCATCCGACGGAATAGTCAACGAGAACCTTGT 6711
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | || || ||| | || ||||| |||| || ||||| ||||| ||
Sbjct 6712 CGAGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAAT 6771
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| ||||| ||||| ||||| ||||| || ||| | |||||
Sbjct 6772 TATGATGGAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGA 6831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177349292147818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |