Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4565 277 2e-69 seq1268 109 8e-19 >seq4565 Length=7484 Score = 277 bits (306), Expect = 2e-69 Identities = 1146/1779 (64%), Gaps = 39/1779 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| |||| |||||||| | ||||| || |||||||| ||||| || ||| Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| ||| ||||||||| || | ||| | || || || Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6615 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| || || | || || || | ||| || ||||||| | | Sbjct 6614 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6555 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 6554 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6495 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || |||||||| | || || ||||| || | || | Sbjct 6494 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6435 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || ||| | || | | | | || || || ||||| | ||| ||||| ||| Sbjct 6434 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6375 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||||| ||| || ||| || |||||||| | | || || || Sbjct 6374 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6315 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 |||||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 6314 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6256 Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | |||| | |||| || | | ||| |||||||| || | ||| ||| Sbjct 6255 GTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 6197 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||||||| || || || || ||| || | || || ||||| | Sbjct 6196 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6137 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026 || || | ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 6136 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6079 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA- 69084 ||| || | | ||||| | |||| ||||| | || ||||| |||| || || Sbjct 6078 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 6021 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 | ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| | Sbjct 6020 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 5962 Query 69145 CTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 ||||| | | ||||| | || || || || || || || || || || | |||| ||| Sbjct 5961 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 5902 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CAA 69259 || |||| | || || | || || | ||||| | ||| || | | || Sbjct 5901 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 5842 Query 69260 ACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 | || || || || | || || | ||||| || || |||| | | || Sbjct 5841 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 5782 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || | || ||||| || | ||| | || || || || || | || || || Sbjct 5781 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 5722 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| ||||| || || ||||||||||| || || ||| | || || ||| | |||| || Sbjct 5721 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 5662 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTTT 69494 || ||| || | ||||| || || || ||||||| || || | || || Sbjct 5661 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCTT 5605 Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 ||||| ||| || ||| || || || || | |||||| |||| |||||||| Sbjct 5604 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5545 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATAG 69611 |||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || || Sbjct 5544 TTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 5488 Query 69612 ATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||| |||||||| | || ||| || ||||| | || | |||||| || || | Sbjct 5487 ATCCGGAATCCACAAGGC-ATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGT 5429 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 | ||| || || || ||||| | || ||| | ||||| || || ||||| | || | Sbjct 5428 TCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAA 5369 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || || ||||| || || || | |||||| ||||||||||| | |||| Sbjct 5368 ATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTC 5309 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 |||||||| | || || || || ||||| || || || | || || || | | Sbjct 5308 GTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGG 5249 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | || || | ||| ||||| || ||||| || |||||||||| | |||||| Sbjct 5248 CACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 5189 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | || ||||| ||||| || || ||||| || |||| | || || || || Sbjct 5188 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 5129 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | || ||| || || || || | |||||| || ||||| ||||| Sbjct 5128 ATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 5069 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089 |||| | || | || ||||| || ||||| || || ||||| ||| | ||||| Sbjct 5068 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATA 5010 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || | || |||||||| | ||| ||||| || |||||| Sbjct 5009 CCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCT 4971 >seq1268 Length=12646 Score = 109 bits (120), Expect = 8e-19 Identities = 303/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| | |||||||| || || || |||||| | Sbjct 7450 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7391 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429 | || || || |||||||| || || || || | | || || || | ||| Sbjct 7390 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTA-- 7333 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCAC 39488 || | | | | | ||| ||||| || || |||||| ||||||| ||| | Sbjct 7332 -CCAAGAGCGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC 7274 Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548 ||||| || | ||| | || |||||||| || | || |||| |||||| || | Sbjct 7273 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 7215 Query 39549 CGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTT 39606 | |||||||| || | || || || ||| | || || | ||| || || Sbjct 7214 CAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGA 7157 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 || | | ||| |||||||| ||| || || ||||| | || | || || || Sbjct 7156 GAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGA 7097 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 || ||||| |||| ||| | |||||||| |||||||| || || | ||| || ||||| Sbjct 7096 GAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCC 7037 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 | ||||||||||| || || || ||||| ||||| || Sbjct 7036 ACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 6998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867679921960