Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4565 214 2e-50 >seq4565 Length=7484 Score = 214 bits (236), Expect = 2e-50 Identities = 940/1469 (64%), Gaps = 49/1469 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||||||||||||||| || || ||| | ||||| | |||| Sbjct 6357 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 6298 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||||||||| || || | | | |||||| || | ||| | | |||||| || Sbjct 6297 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTT 6238 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 ||| | ||||||||| | | | | ||| | || | ||||||| || | |||| Sbjct 6237 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 6179 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || | || | || || || || |||| ||||||| ||| | | ||| | Sbjct 6178 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAA 6119 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 ||| | || || | ||||| || || ||||| ||||| || || | | Sbjct 6118 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 6059 Query 111006 CCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAG 111060 |||||||||| ||| ||||||| || || | || |||| |||| || || Sbjct 6058 GCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAG 6004 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-A 111119 |||||||||||| | | | ||||||| || || | ||| ||||| || ||| | Sbjct 6003 ACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGA 5945 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || ||||||||| ||| | ||| || ||| | | || | | Sbjct 5944 CGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCT 5885 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGG 111236 | ||||| |||| |||| |||| | ||| ||||| ||| | |||| || | Sbjct 5884 CGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAG 5828 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || || ||||| || || ||| ||||| | | ||| || | |||||||| Sbjct 5827 CAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTG 5768 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || || ||||| || ||| || || | ||||||||||| |||||||||||||| | Sbjct 5767 TGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATG 5708 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||||| |||||| | || | || ||||| || || | | |||||| | | || Sbjct 5707 CATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACC 5648 Query 111417 AAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | ||| | |||| ||| | | || ||| ||| || | | Sbjct 5647 AAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCAT 5591 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGAC 111530 |||| ||||||||||| || || | || | | || || | | ||| || | Sbjct 5590 AGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGC 5534 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | | || | ||| | || | ||| ||||| ||||||||||| || || |||||||| Sbjct 5533 ACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCA 5476 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 || || | || ||||| | || | ||||| | || ||||| ||| | || Sbjct 5475 CAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTC 5416 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||||||| | | ||| |||||||| ||||||||||||||||| | || | | Sbjct 5415 CAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGG 5359 Query 111709 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 |||| ||| |||| | || || | || ||| || || || || ||||| || Sbjct 5358 ACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGG 5299 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 | || || | || | ||| || || || || | | |||| | | Sbjct 5298 TACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCT 5239 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 || |||| | |||||||| ||||| || ||||| ||||| | | || || Sbjct 5238 GTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGT 5179 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 |||| ||||| | || |||||||| | | || |||||||| || | ||| Sbjct 5178 ATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTG 5119 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001 | | |||||||||||| ||| || || || | ||||| |||| || | | || Sbjct 5118 TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGG 5060 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||| ||||| | | | || || || || ||||| || || | || | Sbjct 5059 ACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAA 5000 Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-G 112120 | ||||||| ||| | |||||| ||| | | |||||||| || |||| || | Sbjct 4999 CACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACG 4940 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || ||| ||||| |||| || ||||| Sbjct 4939 ATC-GCTCGAGGGTCTTGAATCCGAAGTA 4912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994404434400