Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4565 140 4e-28 seq1268 109 7e-19 >seq4565 Length=7484 Score = 140 bits (154), Expect = 4e-28 Identities = 1115/1774 (63%), Gaps = 57/1774 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 6733 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 6674 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||| | | |||||| || | | |||| | || || || |||| Sbjct 6673 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 6614 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | |||||| ||| || || || | ||| || ||||| || ||||| | || || Sbjct 6613 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 6555 Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 || ||| | || | ||||| || ||| |||| || ||| || ||| |||| || Sbjct 6554 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6496 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102 | || ||||| || || ||||| | || || | | |||||| | | ||| Sbjct 6495 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6436 Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160 ||| | || || | ||||||| | || ||| | | ||||| || || Sbjct 6435 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 6378 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || | | || | ||| ||||| || | |||||||| ||||||||||| ||| Sbjct 6377 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 6319 Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279 ||| | ||||| | ||| |||||| ||||| || || | ||| | ||||| |||| Sbjct 6318 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 6259 Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCG-TCCCAGTCGTA---GTTG--AGCTTTGT 118333 ||| | || | ||| || ||| | ||| |||||||| | || | || | | Sbjct 6258 ACCGTGTTGTTTGATGGATTTCTTCA-AGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAA 6200 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 |||||| ||||||| | || || || | || | || || || || | || Sbjct 6199 CTCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGT 6145 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 |||||| | ||| ||| || | || | || | || ||||| || || Sbjct 6144 CTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAAT 6085 Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--G 118511 ||||| || || || || | |||||| || || ||||| | | ||| | Sbjct 6084 AGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAG 6025 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | ||| || |||| || |||||||| ||||||| | || || ||||| | | | Sbjct 6024 AGCCAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAA 5967 Query 118572 TTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || ||| | || ||| ||||| || | || | || || | | | || | || Sbjct 5966 TTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTT 5908 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TT 118689 | || || || | || | || |||||||||| | |||| || | | ||| || Sbjct 5907 TCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATT 5851 Query 118690 CATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 ||| ||| | | || || || || || |||| ||||| || | ||||| Sbjct 5850 CATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGG 5791 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 ||| ||| || | |||||| |||||||| || || || ||||||||| | |||||| Sbjct 5790 GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTT 5731 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| || ||| |||| || |||||||||||||||||| |||| | || ||||| || Sbjct 5730 TTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGT 5671 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCG 118924 ||| | || |||||| | | ||| | | ||| | ||| ||| ||| Sbjct 5670 TTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCT 5614 Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984 || || | ||| || | ||||| ||||||||||| || || | || | | Sbjct 5613 ACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAA 5554 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 ||| || | || ||||| | || | ||| | | || ||||| |||||||| Sbjct 5553 CCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCAT 5494 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 |||||| || || ||||| | || |||| ||||| || ||| ||||||| | || Sbjct 5493 GAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC 5434 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || || | |||| || || | | ||| |||||||| || || || || || Sbjct 5433 GTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGAC 5374 Query 119165 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218 || | || || | |||| ||| | |||| || || || |||||| || Sbjct 5373 TGCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATT 5317 Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGA 119276 || || || ||||| || | ||| || | ||| | || || || || ||| || | Sbjct 5316 GAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG- 5258 Query 119277 GACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 119336 || | |||| | || ||| |||| | ||||||||| || || || ||||| Sbjct 5257 CAC-CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 5199 Query 119337 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 119396 || || | |||| | | || || ||||| || || |||| | | ||| Sbjct 5198 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 5139 Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455 |||||||| || | || || || |||||||||||| ||| || || || | || Sbjct 5138 AGGAAGCATGATGAAAGCTG-TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 5080 Query 119456 GTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| |||| || | | |||||| || ||||||||| | | || || || | Sbjct 5079 GTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGT 5021 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 | ||||||||||| | | || ||||| | ||| Sbjct 5020 CACCGTGAATACCAACGGCAACACGCATGATCAT 4987 >seq1268 Length=12646 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | || Sbjct 7131 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 7072 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| ||| Sbjct 7071 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 7012 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || |||| ||||||| |||||||| Sbjct 7011 GCAAAAGCAACCAGACGCTGAGCAAAGG 6984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618398178922840