Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 241 1e-58
seq1268 111 2e-19
>seq4565
Length=7484
Score = 241 bits (266), Expect = 1e-58
Identities = 687/1039 (66%), Gaps = 38/1039 (4%)
Strand=Plus/Minus
Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931
||||||| || || || || |||| |||||| ||||| || || | |||||||||| ||
Sbjct 6013 CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGG 5954
Query 78932 CCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990
|| | | || |||| || |||| || |||| ||||| ||| | |||||
Sbjct 5953 CCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACT 5895
Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG------AAAG 79042
|||| ||||||| | || |||||| || || ||| || ||| || |
Sbjct 5894 TGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTCCACAAATG 5837
Query 79043 TCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCTAGAAACCT 79099
| || || ||| | || |||| ||| || || | || || | || ||| ||| |
Sbjct 5836 TTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGCAGAGTATT 5780
Query 79100 CGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155
||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||
Sbjct 5779 CGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTTGGTTG 5724
Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215
||||||| ||| || || |||||||| |||| | || | ||||||||| ||| |
Sbjct 5723 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 5664
Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTG 79271
| ||||| | || ||| | | |||| || ||| | | |||| || |
Sbjct 5663 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 5604
Query 79272 TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331
| | || || || | | | || | || ||||| ||||| | || || ||
Sbjct 5603 T----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 5548
Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391
|| || | |||||||| || ||| ||| ||| ||| ||||| || |||||||||
Sbjct 5547 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 5488
Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451
||||| ||||||| ||| ||| || || ||| || | || || | ||| |||||
Sbjct 5487 ATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTT 5428
Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511
| || || || || || || | | || |||||||| ||||| ||||||| || ||
Sbjct 5427 CTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAA 5368
Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571
| ||| |||||| || || |||| |||||| | || ||||| |||||||||||
Sbjct 5367 TGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCG 5308
Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC 79631
||||| || |||||||||| || | ||||| || ||| ||| || ||| | ||
Sbjct 5307 TAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGC 5248
Query 79632 CCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690
|| || | | | | || || || || || || | || ||||| || ||
Sbjct 5247 ACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 5189
Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750
|||||| || || || || || || || || ||||||||| | | ||||||||
Sbjct 5188 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 5129
Query 79751 TCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809
|| | |||| | |||| ||||| ||| ||| || || || | ||||| ||||||
Sbjct 5128 ATGAAAGCTGT-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5070
Query 79810 AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATG 79869
| || | | ||| || | ||| ||||| || ||| | || ||||| ||||| ||
Sbjct 5069 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATA 5010
Query 79870 CCGACCGCGACGCGCATGA 79888
|| || || || |||||||
Sbjct 5009 CCAACGGCAACACGCATGA 4991
Score = 172 bits (190), Expect = 6e-38
Identities = 396/591 (67%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || || || || || ||||| || | | | | ||||| |||
Sbjct 4991 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 5050
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|||| ||| | | || | |||||| ||||| | || || |||||| ||| |||||
Sbjct 5051 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 5110
Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|||| | ||| | || || ||||| | | ||||||||| || || ||||| ||
Sbjct 5111 CACAAGCA-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGT 5169
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| || || || |||||| || || ||||| || | || ||||| || ||
Sbjct 5170 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 5229
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| | | | | ||||| | | |||| || ||| || || ||||| || |
Sbjct 5230 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 5288
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||| ||||| || || |||||| |||| || ||
Sbjct 5289 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 5348
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | || || |||| || ||||| |||||||| || || | ||
Sbjct 5349 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 5408
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | || || | ||| || || || |||
Sbjct 5409 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 5468
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
||||||||||||||||| || |||||| || ||||| ||| ||| || ||| ||
Sbjct 5469 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 5528
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
|||||||| | ||||| ||||| | | || || || ||||| | |||
Sbjct 5529 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 5579
>seq1268
Length=12646
Score = 111 bits (122), Expect = 2e-19
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || ||
Sbjct 6986 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 7044
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| ||
Sbjct 7045 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 7104
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119
||| || ||||| || || || ||||||
Sbjct 7105 GCTCATCTCCCGTGATGAAGGTCTCCAT 7132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548491963934160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |