Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq576 163 7e-35
seq257 138 3e-27
seq3874 132 1e-25
seq4565 107 4e-18
seq4583 100 7e-16
>seq576
Length=13942
Score = 163 bits (180), Expect = 7e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| ||||| |||||||||||||| || || |||||
Sbjct 11226 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 11285
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || || || || |||||||| | |||||||| || ||||||| ||
Sbjct 11286 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 11345
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| || || ||||| ||
Sbjct 11346 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAG 11405
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 11406 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 11435
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || || ||||||||||| |||||||| || || | || || | |||||
Sbjct 11008 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 11067
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || |||||||| ||||| ||||| || || | || ||||| ||
Sbjct 11068 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 11127
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| ||||||||| |||||||| || || |||||||| | ||||| |||
Sbjct 11128 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 11187
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 11188 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219
Score = 143 bits (158), Expect = 6e-29
Identities = 154/201 (77%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || ||||| ||||| ||||| ||||| || || | |||||
Sbjct 11506 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGG- 11564
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | |||||||| || || |||||||||||||| | ||| |||||||| || |||| ||
Sbjct 11565 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 11624
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||| ||||| || ||||| |||||||| || | || |||||||
Sbjct 11625 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGA 11684
Query 211072 GAGTGATCGTCTTTCCCGTGA 211092
| ||||| ||||| || ||||
Sbjct 11685 GGGTGATGGTCTTGCCGGTGA 11705
>seq257
Length=33499
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||| ||||| || || | |||||| | ||| || || || ||||| || ||||||||
Sbjct 15645 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15586
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| ||| ||||||||||||||||| || || || ||
Sbjct 15585 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15526
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || |||||| || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 15525 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15467
>seq3874
Length=1130
Score = 132 bits (146), Expect = 1e-25
Identities = 105/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||||||||| || ||||||||||| || || | |||||| | |||||||
Sbjct 126 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 67
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || ||||| || ||||| || | ||| |||||||||
Sbjct 66 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 7
Query 211023 TGGATC 211028
||||||
Sbjct 6 TGGATC 1
>seq4565
Length=7484
Score = 107 bits (118), Expect = 4e-18
Identities = 192/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||||||||||||||| || ||||| ||||| ||||| || ||||
Sbjct 5736 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 5677
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||||| ||||||| |||||||| | |||||||| |||||| || ||||| |
Sbjct 5676 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACC 5617
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
| | ||||| ||||| || | | ||||| | || || || ||||| |||||| |
Sbjct 5616 TCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGC 5557
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTCA-CTCGT 178330
| || ||| ||||||||||| | || |||| | ||| ||| |||| | ||
Sbjct 5556 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTT--TTCAACACGC 5499
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
||||||||||| || | |||| | |||||||||||
Sbjct 5498 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 5462
>seq4583
Length=26249
Score = 100 bits (110), Expect = 7e-16
Identities = 129/175 (74%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
|| ||||||||||| | || || |||||||| ||||||||| | | ||||| |||||
Sbjct 23157 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 23098
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926
||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| |
Sbjct 23097 AAGCGCCACAACTACGTCCGTAAGGTTGCTGAGCTGGCTGTTCAGAATTTCATCACCGCA 23038
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
|||| |||| ||| |||||||| ||||||| |||||||| || |||||||
Sbjct 23037 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTCAAGA 22986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159080875519985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |