Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq576 163 7e-35 seq257 138 3e-27 seq3874 132 1e-25 seq4565 107 4e-18 seq4583 100 7e-16 >seq576 Length=13942 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||||| |||||||||||||| || || ||||| Sbjct 11226 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 11285 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || |||||||| | |||||||| || ||||||| || Sbjct 11286 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 11345 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 11346 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAG 11405 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||||||||| || Sbjct 11406 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 11435 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||||||||| |||||||| || || | || || | ||||| Sbjct 11008 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 11067 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || |||||||| ||||| ||||| || || | || ||||| || Sbjct 11068 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 11127 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||||||| |||||||| || || |||||||| | ||||| ||| Sbjct 11128 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 11187 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | ||||| Sbjct 11188 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| || || ||||| ||||| ||||| ||||| || || | ||||| Sbjct 11506 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGG- 11564 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || || |||||||||||||| | ||| |||||||| || |||| || Sbjct 11565 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 11624 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||| ||||| || ||||| |||||||| || | || ||||||| Sbjct 11625 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGA 11684 Query 211072 GAGTGATCGTCTTTCCCGTGA 211092 | ||||| ||||| || |||| Sbjct 11685 GGGTGATGGTCTTGCCGGTGA 11705 >seq257 Length=33499 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || | |||||| | ||| || || || ||||| || |||||||| Sbjct 15645 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15586 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||||||||| || |||| ||| ||||||||||||||||| || || || || Sbjct 15585 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15526 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || |||||| || ||||| || ||||| ||||||||||| || ||||| || || Sbjct 15525 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15467 >seq3874 Length=1130 Score = 132 bits (146), Expect = 1e-25 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||||||| || ||||||||||| || || | |||||| | ||||||| Sbjct 126 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 67 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || ||||| || ||||| || | ||| ||||||||| Sbjct 66 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 7 Query 211023 TGGATC 211028 |||||| Sbjct 6 TGGATC 1 >seq4565 Length=7484 Score = 107 bits (118), Expect = 4e-18 Identities = 192/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||||||||||||||| || ||||| ||||| ||||| || |||| Sbjct 5736 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 5677 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| ||||||| |||||||| | |||||||| |||||| || ||||| | Sbjct 5676 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACC 5617 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 | | ||||| ||||| || | | ||||| | || || || ||||| |||||| | Sbjct 5616 TCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGC 5557 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTCA-CTCGT 178330 | || ||| ||||||||||| | || |||| | ||| ||| |||| | || Sbjct 5556 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTT--TTCAACACGC 5499 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||||||||||| || | |||| | ||||||||||| Sbjct 5498 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 5462 >seq4583 Length=26249 Score = 100 bits (110), Expect = 7e-16 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 || ||||||||||| | || || |||||||| ||||||||| | | ||||| ||||| Sbjct 23157 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 23098 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926 ||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| | Sbjct 23097 AAGCGCCACAACTACGTCCGTAAGGTTGCTGAGCTGGCTGTTCAGAATTTCATCACCGCA 23038 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 |||| |||| ||| |||||||| ||||||| |||||||| || ||||||| Sbjct 23037 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTCAAGA 22986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159080875519985