Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 313 3e-80
>seq4565
Length=7484
Score = 313 bits (346), Expect = 3e-80
Identities = 1159/1791 (65%), Gaps = 40/1791 (2%)
Strand=Plus/Minus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || |||||||| || | ||||||| | ||||| || ||||||||
Sbjct 6747 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6688
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| || || ||||||| |||| ||| |||||||||| || | ||| |
Sbjct 6687 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6628
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
|| || || ||||| ||||| || || || || | || || || | ||||||
Sbjct 6627 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 6568
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 6567 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 6508
Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| |||||| ||| | | |||||||| ||||||||||| | || || |||||
Sbjct 6507 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 6448
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | || ||| ||| | | || | | | | || || || ||||| |
Sbjct 6447 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 6388
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | |
Sbjct 6387 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 6328
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
|| ||| || | |||||||| || || ||||||||||| || || | |||||
Sbjct 6327 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 6268
Query 77246 ATTTCTGAGACCATGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304
|| | || ||| ||| | |||| | |||| || || | ||| |||||||| || |
Sbjct 6267 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 6209
Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363
|||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 6208 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 6150
Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419
|| || |||| |||| || || || ||| | || |||| || | ||| || |
Sbjct 6149 TAGGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 6094
Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478
|| ||||| |||||||| || | | ||||| | |||| |||||| ||||| |
Sbjct 6093 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 6035
Query 77479 GATAATGTAAAAG-AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537
| |||| || || | ||| ||||| || | || ||||| || | | | ||||||| |
Sbjct 6034 G-TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGA 5976
Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597
|| | |||| || | || ||||| | || || || || ||||| || || ||
Sbjct 5975 TGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTG 5916
Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657
|| | ||||| ||||| |||| | || || | || || | ||||| | ||||
Sbjct 5915 TTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCC 5856
Query 77658 TCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711
|| | | || | ||||| | ||| || || || | ||||| || || |||
Sbjct 5855 TCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCA 5796
Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771
| | | | |||| | || || || || | ||| | || ||||| ||
Sbjct 5795 TCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGG 5736
Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831
|| | |||||||||||| || ||||||| ||||| ||||| || || ||| | |||||
Sbjct 5735 TTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTC 5676
Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTAT 77891
||| | || | |||| ||| || | ||| | | |||| | || | |||
Sbjct 5675 TCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG--- 5622
Query 77892 CG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA 77945
|| ||||| ||| ||||| ||| || |||||| || || || | |||
Sbjct 5621 CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACA 5562
Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACT 78005
||| |||| ||||| |||||||| |||||||| | || ||| || | | | | |||
Sbjct 5561 TCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACA 5502
Query 78006 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCT 78065
|| ||||| |||||||| || ||||| | ||| || ||||| |||| | ||||
Sbjct 5501 CGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT 5442
Query 78066 TCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125
|| || || |||||| || || || ||||| | || ||| | ||||| || ||
Sbjct 5441 TCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCA 5382
Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185
||||| | ||| | | ||||| || || || || || || || | ||||| || |||
Sbjct 5381 AGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTG 5322
Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245
||||| |||||| | ||| || | || ||||| || | || || || || | ||
Sbjct 5321 TTATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATG 5262
Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305
|| ||| | || || || | |||| | || || ||||| || | |||||
Sbjct 5261 TATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAG 5202
Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365
|| | ||| || || | ||||| || ||||| || ||||| || ||| |||| | |
Sbjct 5201 ATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCA 5142
Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425
| || || || || | || || || || || || | ||| || ||
Sbjct 5141 ATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAG 5082
Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC- 78484
|| || || || |||| | || | || ||||| || ||||| || || || ||
Sbjct 5081 GCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCG 5022
Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| | ||||| || || || |||||||| | ||| ||||| || | |||
Sbjct 5021 TCACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694627215388960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |