Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4565 313 3e-80 >seq4565 Length=7484 Score = 313 bits (346), Expect = 3e-80 Identities = 1159/1791 (65%), Gaps = 40/1791 (2%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || |||||||| || | ||||||| | ||||| || |||||||| Sbjct 6747 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6688 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| ||| |||||||||| || | ||| | Sbjct 6687 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6628 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || || ||||| ||||| || || || || | || || || | |||||| Sbjct 6627 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 6568 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 6567 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 6508 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | |||||||| ||||||||||| | || || ||||| Sbjct 6507 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 6448 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | || ||| ||| | | || | | | | || || || ||||| | Sbjct 6447 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 6388 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | | Sbjct 6387 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 6328 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||||| || || ||||||||||| || || | ||||| Sbjct 6327 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 6268 Query 77246 ATTTCTGAGACCATGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| ||| | |||| | |||| || || | ||| |||||||| || | Sbjct 6267 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 6209 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363 |||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 6208 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 6150 Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419 || || |||| |||| || || || ||| | || |||| || | ||| || | Sbjct 6149 TAGGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 6094 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478 || ||||| |||||||| || | | ||||| | |||| |||||| ||||| | Sbjct 6093 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 6035 Query 77479 GATAATGTAAAAG-AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 | |||| || || | ||| ||||| || | || ||||| || | | | ||||||| | Sbjct 6034 G-TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGA 5976 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | |||| || | || ||||| | || || || || ||||| || || || Sbjct 5975 TGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTG 5916 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || | ||||| ||||| |||| | || || | || || | ||||| | |||| Sbjct 5915 TTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCC 5856 Query 77658 TCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 || | | || | ||||| | ||| || || || | ||||| || || ||| Sbjct 5855 TCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCA 5796 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | | | | |||| | || || || || | ||| | || ||||| || Sbjct 5795 TCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGG 5736 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 || | |||||||||||| || ||||||| ||||| ||||| || || ||| | ||||| Sbjct 5735 TTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTC 5676 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTAT 77891 ||| | || | |||| ||| || | ||| | | |||| | || | ||| Sbjct 5675 TCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG--- 5622 Query 77892 CG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA 77945 || ||||| ||| ||||| ||| || |||||| || || || | ||| Sbjct 5621 CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACA 5562 Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACT 78005 ||| |||| ||||| |||||||| |||||||| | || ||| || | | | | ||| Sbjct 5561 TCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACA 5502 Query 78006 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCT 78065 || ||||| |||||||| || ||||| | ||| || ||||| |||| | |||| Sbjct 5501 CGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT 5442 Query 78066 TCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125 || || || |||||| || || || ||||| | || ||| | ||||| || || Sbjct 5441 TCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCA 5382 Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185 ||||| | ||| | | ||||| || || || || || || || | ||||| || ||| Sbjct 5381 AGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTG 5322 Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245 ||||| |||||| | ||| || | || ||||| || | || || || || | || Sbjct 5321 TTATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATG 5262 Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305 || ||| | || || || | |||| | || || ||||| || | ||||| Sbjct 5261 TATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAG 5202 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 || | ||| || || | ||||| || ||||| || ||||| || ||| |||| | | Sbjct 5201 ATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCA 5142 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 | || || || || | || || || || || || | ||| || || Sbjct 5141 ATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAG 5082 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC- 78484 || || || || |||| | || | || ||||| || ||||| || || || || Sbjct 5081 GCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCG 5022 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | ||||| || || || |||||||| | ||| ||||| || | ||| Sbjct 5021 TCACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694627215388960