Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 340 3e-88
>seq4565
Length=7484
Score = 340 bits (376), Expect = 3e-88
Identities = 1168/1793 (65%), Gaps = 36/1793 (2%)
Strand=Plus/Minus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||||||||| || | |||||| | | ||||| || ||||||||
Sbjct 6747 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6688
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| ||| |||||||||| || | ||| |
Sbjct 6687 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6628
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || || ||||| ||||| || || || || | || || || | ||||||
Sbjct 6627 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 6568
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 6567 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 6508
Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||||| || | | |||||||| || || ||||||| || || |||||
Sbjct 6507 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 6448
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | || ||| ||| | ||| | | | | || || || |||||||
Sbjct 6447 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 6388
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | |
Sbjct 6387 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 6328
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||||| || || || |||||||| || || | |||||
Sbjct 6327 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 6268
Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
|| | || ||| ||| | |||| | |||| || ||| ||| |||||||| || |
Sbjct 6267 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 6209
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958
||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 6208 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 6150
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016
|| || || || || || || | ||| | || |||| | | | || ||| |||
Sbjct 6149 TAGGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 6092
Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075
||||| |||||||| || | | || || | |||| |||||| | ||||| ||
Sbjct 6091 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 6034
Query 76076 TAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134
|||| || || | ||| ||||| || || || ||||| || | | | ||||||| |||
Sbjct 6033 TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATG 5974
Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194
| |||| || || ||||| | ||||| || || || || || || || ||
Sbjct 5973 ACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTT 5914
Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254
| ||||||||||| |||| | || || | || || | ||||| | |||| ||
Sbjct 5913 CAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTC 5854
Query 76255 TATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308
||| || | || || ||||| || || || | ||||| || || ||||
Sbjct 5853 ATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 5794
Query 76309 AGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAG 76365
| |||| |||| | || || ||||| | ||| | || || || ||
Sbjct 5793 TGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 5737
Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425
|| | |||||||||||| ||||| |||| ||||| ||||| | || ||| |||| ||
Sbjct 5736 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 5677
Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTA 76485
||| | || | |||| ||| || | ||| | | ||||| || | || |
Sbjct 5676 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGA 5619
Query 76486 TCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543
| || | || ||| || | | ||| | |||||| || || || | ||||||
Sbjct 5618 CCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCA 5559
Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603
|||| |||||||||||||| || ||||| | || ||| || | | | | ||| ||
Sbjct 5558 GCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGC 5499
Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663
||||| |||||||| || ||||| | ||| || ||||| |||| | ||||||
Sbjct 5498 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCC 5439
Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723
|| || |||||| || || |||||||| | || ||| | ||||| || || |||
Sbjct 5438 TTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGA 5379
Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783
|| | || | |||| || || || || || || || || | ||||| |||||||||
Sbjct 5378 TAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTA 5319
Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843
|| |||||| | ||| || | |||||||| || |||| || || || | || ||
Sbjct 5318 TTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTAT 5259
Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903
||| ||||| || | ||| || || || ||||| || ||||||||||
Sbjct 5258 GCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 5199
Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963
| |||||| || | || ||||| || || || |||||||| ||| |||| | ||
Sbjct 5198 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 5139
Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023
|| || || || | || || || || || || | |||||| || ||
Sbjct 5138 AGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 5079
Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-CC 77081
|| ||||| |||| | || | || ||||| || ||||| | ||| || ||||| |
Sbjct 5078 TGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCGATATCGTC 5020
Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134
| | ||||| || || || |||||||| | ||| ||||| || |||||| ||
Sbjct 5019 ACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCA 4968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712891721964480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |