Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq576 107 4e-18
>seq576
Length=13942
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| || || |||||||| ||||||||||| || | || ||| | |||||
Sbjct 11008 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 11067
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || |||||||| | |||||||||| | ||| || ||||| |||
Sbjct 11068 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 11127
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || ||| ||| || | || | | | ||||| ||| || || | || || ||
Sbjct 11128 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 11187
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| ||||||| |||||
Sbjct 11188 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219
Score = 102 bits (112), Expect = 2e-16
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970
||| || || ||||||||||| | | |||||| ||||| || | ||||| || ||
Sbjct 10800 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 10857
Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030
||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| ||||||
Sbjct 10858 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 10917
Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090
| || | | | ||||| || ||||| | ||||| || || || || | ||||||
Sbjct 10918 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTG 10977
Query 152091 ACGAAGACCTGCAT 152104
||||||| ||||||
Sbjct 10978 ACGAAGATCTGCAT 10991
Score = 102 bits (112), Expect = 2e-16
Identities = 142/198 (72%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || ||||||||||||||||| ||| | || | |||||||| |
Sbjct 11241 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 11299
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || |||||||| | | || || |||| | || || ||||| || || |
Sbjct 11300 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 11359
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| || ||| || |||||||| || || ||||
Sbjct 11360 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGC 11419
Query 152077 CCGTGAGAGTCTTCACGA 152094
| ||||||||||| ||||
Sbjct 11420 CAGTGAGAGTCTTGACGA 11437
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| ||||||||||| ||||| |||||||| ||| || || | |||||
Sbjct 11515 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 11574
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| ||
Sbjct 11575 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 11634
Query 152012 TTGAATTTT 152020
||||| ||
Sbjct 11635 CTGAATCTT 11643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153750002637419
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |