Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq967 159 4e-34
seq187 154 2e-32
seq3189 150 2e-31
seq1585 140 3e-28
seq2289 134 1e-26
seq3352 118 1e-21
seq3240 118 1e-21
seq4277 111 2e-19
seq941 109 6e-19
seq1832 86.0 7e-12
>seq967
Length=3566
Score = 159 bits (176), Expect = 4e-34
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
||||||||||| |||||||||||||| ||||||| ||||||| | ||||| |||||||||
Sbjct 122 TCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGCGTGATCTCAGTTCACTTCAACCTCCG 63
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461
||||| || ||||||| |||||||||||| ||||||| |||||||||||| |||||||
Sbjct 62 CCTCCTGGCTTCAAGCAATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGGACTACAGGC 5
>seq187
Length=11015
Score = 154 bits (170), Expect = 2e-32
Identities = 122/145 (84%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| |||||||||| |||||||||||||||||| ||||| ||||||| |||||||
Sbjct 10869 TCTCTCTCTGTTGCC-AGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTACAACCTCTA 10927
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463
|||||| | ||||||| |||||||||||| ||||||| |||| |||||| ||||||
Sbjct 10928 CCTCCCAGATTCAAGCAATTCTCCTGCCTTAGCCTCCCAAGTATCTGGGACTACAGGTGT 10987
Query 8464 AAGCCACCACGCCAAGCTAATTTTT 8488
| ||||||| ||| |||||||||||
Sbjct 10988 ATGCCACCATGCCCAGCTAATTTTT 11012
>seq3189
Length=4266
Score = 150 bits (166), Expect = 2e-31
Identities = 120/143 (84%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 8362 GCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTA 8421
||||||||| |||||| |||| |||||| |||||||| | |||| |||||||||| |
Sbjct 145 GCTGGAGTGAAGTGGCGCCATCTTGGCTCACCGCAACCTCTGACTCCTGGGTTCAAGCGA 86
Query 8422 TTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCT 8481
||||||||||||||||||| |||||||||||| |||||| ||||||| || |||
Sbjct 85 TTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATCACAGGCGTGTGCCACCA-ACCCGGCT 27
Query 8482 AATTTTTGTATTTTTAGTAGAGA 8504
|||| ||||||||||||||||||
Sbjct 26 AATTCTTGTATTTTTAGTAGAGA 4
>seq1585
Length=6104
Score = 140 bits (154), Expect = 3e-28
Identities = 97/110 (88%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| |||||| ||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 5995 TCTCGCTCTGTCTCCCAGGCTGGAGTGCAGTGGCGCTATCTCAGCTCACTGCAAACTCCG 6054
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGA 8453
|||||| |||||| || ||||||||||||||| |||| ||||||||||||
Sbjct 6055 CCTCCCAGGTTCACGCCATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGA 6104
>seq2289
Length=741
Score = 134 bits (148), Expect = 1e-26
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416
||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 740 CCCAGACTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCG 681
Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCAC 8473
| |||||||||||||||| |||| ||||||||| | |||||||| ||||||||
Sbjct 680 AATGATTCTCCTGCCTCAGCTTCCAAAGTAGCTGGAACTACAGGCATGTGCCACCAC 624
>seq3352
Length=4468
Score = 118 bits (130), Expect = 1e-21
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543
||||||||||||| ||| ||| |||||| |||| ||| |||||||||| | ||||||
Sbjct 156 TTTTTGTATTTTTTGTATAGATGGGGTTTTTCCATTTTGTCCAGGCTGGTTTTTAACTCC 97
Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACA 8593
|| |||||||| |||| || |||| |||||||||||||||||| |||||
Sbjct 96 TGGCCTCATGTTATCCCCCCGCCTTTGCCTCCCAAAGTGCTGGGGTTACA 47
>seq3240
Length=2049
Score = 118 bits (130), Expect = 1e-21
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543
||||||||||||| ||| ||| |||||| |||| ||| |||||||||| | ||||||
Sbjct 1894 TTTTTGTATTTTTTGTATAGATGGGGTTTTTCCATTTTGTCCAGGCTGGTTTTTAACTCC 1953
Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACA 8593
|| |||||||| |||| || |||| |||||||||||||||||| |||||
Sbjct 1954 TGGCCTCATGTTATCCCCCCGCCTTTGCCTCCCAAAGTGCTGGGGTTACA 2003
>seq4277
Length=765
Score = 111 bits (122), Expect = 2e-19
Identities = 86/101 (85%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
|||||||||| | ||| ||||||||| | ||||| | |||||||||||||| | |||
Sbjct 666 CTCTGTTGCC-ATGCTAGAGTGCAGTAGTGCGATCTTGGGTCACTGCAACCTCCACTTCC 724
Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCT 8449
||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 725 CGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCGAGTAGCT 765
>seq941
Length=12164
Score = 109 bits (120), Expect = 6e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
|| |||||||||||| ||||||||||| ||||||| ||||| ||||| |||| |||||
Sbjct 110 CTTTGTTGCCCAGGCGGGAGTGCAGTGTGGTGATCTCGGCTCAATGCAATCTCCCCCTCC 51
Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA 8458
| |||| |||| || |||||| || || || |||||||||||| ||||
Sbjct 50 CAGGTTAAAGCGGTTTTCCTGCTCCAACCCCCTGAGTAGCTGGGACTACA 1
>seq1832
Length=1492
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404
||||||| ||||||||||||||||| || |||| |||||| |||||| |||||||| ||
Sbjct 1419 TCACTCTTGTTGCCCAGGCTGGAGTACAATGGCGCGATCTCAGCTCACCGCAACCTCTGC 1478
Query 8405 CTCCCGGGTTCAAG 8418
||||| | ||||||
Sbjct 1479 CTCCCAGATTCAAG 1492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521456782424600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |