Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq576 118 8e-22 seq257 93.3 3e-14 >seq576 Length=13942 Score = 118 bits (130), Expect = 8e-22 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||||||||| || ||||||||||| | ||||| || | || Sbjct 10782 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 10839 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| || Sbjct 10840 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 10899 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | ||||| || | |||||||| |||| ||||| | Sbjct 10900 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 10957 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || | ||||| |||||||| ||||| Sbjct 10958 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 10991 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| || |||||||||||||| ||| || ||| | || || Sbjct 11238 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 11297 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || ||||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 11298 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 11357 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || || ||||| | || || ||| Sbjct 11358 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 11415 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 11416 TTGCCAGTGAGAGTCTTGACGA 11437 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || ||||||||||| || | || ||| | || || Sbjct 11011 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 11070 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||| ||||| || | || | ||| ||||| || Sbjct 11071 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 11130 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || || | ||| | ||||| || | || || ||||||| || || ||||| Sbjct 11131 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 11189 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||||||||| Sbjct 11190 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 11219 >seq257 Length=33499 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||| |||||||| || | || || |||| || || ||||| ||||| |||| Sbjct 15647 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 15588 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 15587 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15528 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || || | ||| || ||||| | || || ||||||||||| |||||||| || Sbjct 15527 --CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 15470 Query 44326 GAAG 44329 |||| Sbjct 15469 GAAG 15466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359969388822813