Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq576 147 5e-30
seq257 125 2e-23
seq3874 113 1e-19
>seq576
Length=13942
Score = 147 bits (162), Expect = 5e-30
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || ||||| || ||||| | ||||| || |||||
Sbjct 11216 CAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCAGAT 11157
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| ||| |||||| || || || || || ||||| ||||||||||||
Sbjct 11156 ACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 11097
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || || || || ||||| | ||||| | || || ||| ||
Sbjct 11096 CGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAACATC 11037
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| ||||| || |||||||||
Sbjct 11036 CAGAAAGAGTCCACACTGCAT 11016
Score = 141 bits (156), Expect = 2e-28
Identities = 151/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || |||||||| || || || ||||| || ||||| || || ||||||||||
Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| |||||||| || || || |||||||| || ||||| | |
Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || ||||| ||||||||||| | || || ||| || ||| |||||||||
Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258
Query 178111 AATCAACACTGCATCTTG 178128
|||| || || || ||||
Sbjct 11257 AATCCACCCTTCA-CTTG 11241
Score = 116 bits (128), Expect = 9e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || | || |||||||| ||||| ||
Sbjct 11705 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGA 11646
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||||||||| || || ||||| || |||||||| || || | |||||||| || |
Sbjct 11645 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 11586
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|||| || |||||||| | || |||| ||| || ||| | ||||| || || || ||
Sbjct 11585 AACAACTTGAAGATGGCCGTAC-CTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 11527
Query 178122 CATCTTGT 178129
||||| ||
Sbjct 11526 CATCTCGT 11519
>seq257
Length=33499
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || ||||| || |||||||| ||||| || ||| || || ||
Sbjct 15467 TTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATT 15526
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || ||||| || |||||||| ||||| |
Sbjct 15527 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 15586
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || ||||| || ||| | || ||| | || || ||| | |||||
Sbjct 15587 ATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 15645
>seq3874
Length=1130
Score = 113 bits (124), Expect = 1e-19
Identities = 99/122 (81%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066
||| |||||||| || |||||||| || || |||||||| || ||||||||||| || ||
Sbjct 1 GATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAACGTCTGATCTTCGCCGGCAAGCA 60
Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126
|||||||||||| | || ||| |||| || ||| ||||||| ||||| || || || ||
Sbjct 61 ACTCGAAGATGGACGCACCCTTTCCGACTACAACATCCAAAAGGAATCCACTCTTCA-CT 119
Query 178127 TG 178128
||
Sbjct 120 TG 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203657340182066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |