Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq576 111 1e-19
seq3874 100 3e-16
>seq576
Length=13942
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| |||| |||||||||||||||||||| || || ||
Sbjct 10765 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 10824
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || | |||||| || || || |||| ||||||||||||| ||
Sbjct 10825 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 10884
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| | ||| | |||| | || | | | || || ||| |||||
Sbjct 10885 ATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 10943
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| ||||| ||||||||
Sbjct 10944 TTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 10991
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||| |||||||| ||||||
Sbjct 11501 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 11560
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || || || ||||| ||||| |||| |||||||||||||| ||||
Sbjct 11561 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 11620
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | ||||| | ||| | | | || ||||| ||||| |
Sbjct 11621 ATTCCCTCCTTATCC-TGA-ATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGA 11678
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || || || || || ||
Sbjct 11679 CCTCGAGGGTGATGGTCTTGCCGGT 11703
>seq3874
Length=1130
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
||||| || |||||||| | |||| || || ||| ||||| || ||||| ||||||
Sbjct 144 CCGCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 85
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| | || ||||| |||||||||||||| ||||| || || || || |
Sbjct 84 GAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGT 25
Query 41753 GGAACGCTCTCCTTGTCC 41770
|| | | ||||||||||
Sbjct 24 GGGATTCCCTCCTTGTCC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462276325326800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |