Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3136 114 1e-20 >seq3136 Length=22676 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 |||||| || || | | ||| | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 19492 CTATTGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTA 19551 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||| ||||| | | || || | |||||| ||||| || || | |||||| ||||| Sbjct 19552 ATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTC 19611 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCG 43128 | || | | |||||||| | ||| | |||| |||| | | | || || || Sbjct 19612 CGGTGGGATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACG 19670 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || | || ||||| || || || | ||||| || ||||| ||||| Sbjct 19671 ATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 19725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| |||| ||| || || || ||||| || | ||||| || | || || Sbjct 19745 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 19804 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||||||||| || || || || |||||||| | || | | |||||| || | Sbjct 19805 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 19864 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||| ||| | ||| | | | || || ||| || || || | ||||| || || Sbjct 19865 ATCTTTGATTTCA-CGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 19923 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 19924 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 19953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571786943428920