Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08-
07] 4,289 sequences; 35,887,177 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2512 279 6e-70
seq82 91.5 2e-13
>seq2512
Length=7492
Score = 279 bits (308), Expect = 6e-70
Identities = 1149/1788 (64%), Gaps = 41/1788 (2%)
Strand=Plus/Plus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 740 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 799
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 800 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 859
Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 860 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 919
Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 920 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 979
Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342
|| | | || ||||| || |||||||| | || || | ||||| || | || |
Sbjct 980 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1039
Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402
|||||| | ||| | | | | || || |||||||| |||||||||||||||
Sbjct 1040 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1099
Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1100 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1159
Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 1160 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1218
Query 62522 GTATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580
|| | | |||| | |||| || | | |||| | |||||| || | ||| |||
Sbjct 1219 GTGTTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1277
Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640
||||| || || || | | || ||| | || || ||||| |
Sbjct 1278 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 1337
Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62698
|| || || ||| | | |||| | | | || ||| ||| ||||| |||||
Sbjct 1338 TACCCAACTCCTTAGCAATCT--CAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1395
Query 62699 AAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA- 62756
||||| | | || || | |||| ||||| || |||||||| |||| |||||
Sbjct 1396 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 1453
Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 1454 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 1512
Query 62817 ATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875
|||| | | ||||| | || || || || || || || || || || | ||||||||
Sbjct 1513 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 1572
Query 62876 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAA 62931
|| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 1573 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 1632
Query 62932 ACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATA 62989
| ||||| | |||| || |||| ||||| || || |||| | | | ||
Sbjct 1633 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 1692
Query 62990 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 63049
|| | || || ||||| | ||| | || || || | || | ||| || ||
Sbjct 1693 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 1752
Query 63050 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109
||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| ||
Sbjct 1753 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 1812
Query 63110 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCTC 63165
| ||| | | ||| | | | || || || | || | || || | |||||
Sbjct 1813 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTC 1872
Query 63166 TT---TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222
| || |||||| | | ||| |||||||| || | |||| |||| | ||
Sbjct 1873 ATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCAG 1925
Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282
||||||||| || ||||| | | ||| || ||| | | || || ||||| ||||
Sbjct 1926 GACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGA 1985
Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
|||| |||||||| | || ||| || ||||| | | | ||| || || ||
Sbjct 1986 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 2044
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 2045 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2104
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | ||||| || |||||||| || || || | ||||||||| |||||||| |||||
Sbjct 2105 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 2164
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| || | || ||||| || |||| |||||||||| ||| || | ||| ||
Sbjct 2165 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 2224
Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581
||||| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 2225 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 2284
Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641
|| | || ||||| || || || || ||||| || |||| | || || || ||
Sbjct 2285 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 2344
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
|| | || | | || || || || | ||||| || ||||| || ||
Sbjct 2345 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 2404
Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAAT 63760
|||| | || | || ||||| |||||||| || || ||||| || | |||||
Sbjct 2405 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 2463
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
|| || || |||||||| | ||| ||||| || | ||| ||| |||
Sbjct 2464 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTT 2511
>seq82
Length=17769
Score = 91.5 bits (100), Expect = 2e-13
Identities = 223/334 (67%), Gaps = 7/334 (2%)
Strand=Plus/Minus
Query 33804 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
|| || || ||||| |||||||| ||| || | | || |||| || ||||||||
Sbjct 6875 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 6817
Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922
| ||| || |||| || || ||||| || || || || || |||||||| ||
Sbjct 6816 GAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCA 6757
Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982
| |||||||| || || ||||| || || || || | | || || || |||||
Sbjct 6756 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 6697
Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 34038
||| || ||||| || || || | || || || ||||| || || |
Sbjct 6696 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 6637
Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098
| ||| ||| ||||||||| | | || || || | || | ||||| ||||||| |
Sbjct 6636 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 6578
Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132
| |||||||| |||||||| ||||| | ||||||
Sbjct 6577 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6544
Score = 82.4 bits (90), Expect = 1e-10
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683
|| || || || ||||| || | ||| | ||||||||| || ||||| || || ||||||
Sbjct 7109 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCG 7050
Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726
|||||||| |||||||| || || || |||||||| ||||
Sbjct 7049 AATGATCCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 7007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629783833903920
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