Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3136 105 7e-18 seq34 89.7 5e-13 >seq3136 Length=22676 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| |||||||| ||||||| |||| |||||| Sbjct 19973 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 20032 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 |||||||||||||| |||||| |||||| ||||| ||||| || || || ||||| Sbjct 20033 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTC 20088 >seq34 Length=19952 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || || |||| || ||||| ||||| |||||||| ||| Sbjct 14244 GCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 14185 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | ||||||||||| || || || ||||||||||||||||||| || | Sbjct 14184 AAGGGTGCGTCCA-TCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTG 14126 Query 143076 GTATGCCTTCTTTGTC 143091 | || || || ||||| Sbjct 14125 GGATTCCCTCCTTGTC 14110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506987217690480