Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq34 84.2 2e-11 seq3136 82.4 6e-11 >seq34 Length=19952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||||| |||||||| || | || || || | || || Sbjct 14225 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA-AAGGGTGCGTCCATCTTC 14167 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || | || | ||| |||||||| || | | ||||||||| Sbjct 14166 GAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTG 14107 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | |||||||| | || || ||||| || |||||||| Sbjct 14106 GATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTT 14047 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| ||||| || || |||||||| Sbjct 14046 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 14017 >seq3136 Length=22676 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||||||||||| |||||||||||||||| | || | ||||| Sbjct 19516 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 19575 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || ||||| || ||| || | || |||||||| Sbjct 19576 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 19635 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | |||||||| | || ||| || | ||| ||||| || Sbjct 19636 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 19695 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || || || |||||||| Sbjct 19696 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 19725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421229180278289